CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
20286_YNL175C
(
Saccharomyces bayanus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
20286_YNL175C
T55166_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
20286_YNL175C
RRM
127
147
VWIGNLSFDTTKDDLVRFFIA
20286_YNL175C
RRM
164
213
ITRLSMPRVASKNSNSMQNKGFCYMFFKNVEQMKAVLELSESHLNGRNML
20286_YNL175C
RRM
241
311
LFVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTNALKDKSCRKIAGRPLR
Links
Other
RRM
family RBPs
Other
Saccharomyces bayanus
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
NOP13
Saccharomyces cerevisiae
YNL175C
N
0.945
18688_YNL175C
Saccharomyces paradoxus
18688_YNL175C
N
0.945
18240_YNL175C
Saccharomyces mikatae
18240_YNL175C
N
0.912
SAKL0E12738g
Lachancea kluyveri
SAKL0E12738g
N
0.732
KLTH0B06886g
Kluyveromyces thermotolerans
KLTH0B06886g
N
0.722
A7TL72_VANPO
Vanderwaltozyma polyspora
A7TL72_VANPO
N
0.707
ZYRO0G04862g
Zygosaccharomyces rouxii
ZYRO0G04862g
N
0.701