CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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A7TL72_VANPO
(
Vanderwaltozyma polyspora
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
A7TL72_VANPO
T55347_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
A7TL72
RRM
112
131
VWIGNLSFDTTKDDIIKFIV
A7TL72
RRM
143
196
VTEEDIERVNMPLAKNDGKQIKNKGFCYLDFKTDEKMLAVVALSESQLNGRNLL
A7TL72
RRM
224
294
LFVGNLSFDTTDDLLRKHFQHCGEIIKIRMATFQDTGKCKGFAFVDFKNEEGATKALTDKSCRKIAGRPLR
Links
Other
RRM
family RBPs
Other
Vanderwaltozyma polyspora
RBPs
9 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CAGL0J11154g
Candida glabrata
CAGL0J11154g
N
0.783
SAKL0E12738g
Lachancea kluyveri
SAKL0E12738g
N
0.772
ZYRO0G04862g
Zygosaccharomyces rouxii
ZYRO0G04862g
N
0.767
Kwal_14463
Kluyveromyces waltii
Kwal_14463
N
0.753
KLTH0B06886g
Kluyveromyces thermotolerans
KLTH0B06886g
N
0.741
18688_YNL175C
Saccharomyces paradoxus
18688_YNL175C
N
0.728
NOP13
Saccharomyces cerevisiae
YNL175C
N
0.728
18240_YNL175C
Saccharomyces mikatae
18240_YNL175C
N
0.718
20286_YNL175C
Saccharomyces bayanus
20286_YNL175C
N
0.707