CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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e_gw1.1.2297.1
(
Mucor circinelloides
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
e_gw1.1.2297.1
T49731_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw1.1.2297.1
RRM
33
103
LFAGDLGNEVTEELLYKAFSKYPSLLRTRVVRDNRTMKSRGFGFISFKDPDDFVKAWREMNGKYVGNRPIK
Links
Other
RRM
family RBPs
Other
Mucor circinelloides
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RO3G_12779
Rhizopus oryzae
RO3G_12779
N
0.915
e_gw1.30.155.1
Phycomyces blakesleeanus
e_gw1.30.155.1
N
0.859
SPPG_03010
Spizellomyces punctatus
SPPG_03010
I
0.761
GP3.076550
Batrachochytrium dendrobatidis
GP3.076550
I
0.732
DGIL_AUG5s15230g22t1
Acyrtosiphon pisum
DGIL_AUG5s15230g22t1
I
0.704
estExt_Genewise1Plus.C_1180017
Capitella teleta
estExt_Genewise1Plus.C_1180017
I
0.704