CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RO3G_12779
(
Rhizopus oryzae
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
RO3G_12779
T30486_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
RO3T_12778
RRM
193
263
LFAGDLGNEVTEELLFKTFSKYPSLTRTRVVRDSRTMKSKGFGFISFKDPDDFVRAWREMNGKYVGNRPIK
Links
Other
RRM
family RBPs
Other
Rhizopus oryzae
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
e_gw1.1.2297.1
Mucor circinelloides
e_gw1.1.2297.1
N
0.915
e_gw1.30.155.1
Phycomyces blakesleeanus
e_gw1.30.155.1
N
0.831
SPPG_03010
Spizellomyces punctatus
SPPG_03010
I
0.746
GP3.076550
Batrachochytrium dendrobatidis
GP3.076550
I
0.718
gw1.1.892.1
Trichoplax adhaerens
gw1.1.892.1
N
0.704