CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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e_gw1.134.6.1
(
Lottia gigantea
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
e_gw1.134.6.1
T49761_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw1.134.6.1
RRM
204
277
LYVGNINPKMSEPQLCEIFGRYGPLASVKIMWPRTDEERSRGRNCGFVAYMNRKDGERALNELSGQDFSGFEMK
Links
Other
RRM
family RBPs
Other
Lottia gigantea
RBPs
24 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Sjc_0023880
Schistosoma japonicum
Sjc_0023880
N
0.784
Smp_161730
Schistosoma mansoni
Smp_161730
N
0.784
e_gw1.11.101.1
Capitella teleta
e_gw1.11.101.1
N
0.770
GI21069
Drosophila mojavensis
FBgn0143801
N
0.716
GG22076
Drosophila erecta
FBgn0114251
N
0.716
GM15794
Drosophila sechellia
FBgn0170710
N
0.716
GH20523
Drosophila grimshawi
FBgn0127986
N
0.716
GJ21992
Drosophila virilis
FBgn0209106
N
0.716
GE12157
Drosophila yakuba
FBgn0229923
N
0.716
GK22959
Drosophila willistoni
FBgn0224921
N
0.716
GD11555
Drosophila simulans
FBgn0183296
N
0.716
CG9346
Drosophila melanogaster
FBgn0034572
N
0.716
DGIL_AUG5s8618g4t1
Acyrtosiphon pisum
DGIL_AUG5s8618g4t1
N
0.716
DGIL_AUG5s11505g3t1
Acyrtosiphon pisum
DGIL_AUG5s11505g3t1
N
0.716
U2SURP
Oryzias latipes
ENSORLG00000010235
N
0.707
U2SURP
Gasterosteus aculeatus
ENSGACG00000003763
N
0.707
U2SURP
Tetraodon nigroviridis
ENSTNIG00000012767
N
0.707
U2SURP
Takifugu rubripes
ENSTRUG00000017810
N
0.707
PHUM176690
Pediculus humanus
PHUM176690
N
0.703
BGIBMGA003602
Bombyx mori
BGIBMGA003602
N
0.703
amel4_ncbi_hmm17771
Apis mellifera
amel4_ncbi_hmm17771
N
0.703
amel4_ncbi_hmm17771
Tribolium castaneum
amel4_ncbi_hmm17771
N
0.703
GL10142
Drosophila persimilis
FBgn0147752
N
0.703
GA21718-RA
Drosophila pseudoobscura
FBgn0081703
N
0.703