CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
e_gw1.2.4074.1
(
Myceliophthora thermophila
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
e_gw1.2.4074.1
T49884_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw1.2.4074.1
RRM
121
190
ALIRNLPLNTSEESLRLMMVFSKDLVDVEVLPVEQSADAGFRSAILKFKSPAGAQEAKNMLDGKSNISND
e_gw1.2.4074.1
RRM
407
471
LYVGNLPLDTSEEELKAMFSRQRGYKRLCFRTKQNGPMCFVEFEDVTFATKALHELYGQPLHNSV
Links
Other
RRM
family RBPs
Other
Myceliophthora thermophila
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CHGG_06237
Chaetomium globosum
CHGG_06237
N
0.956
estExt_Genewise1.C_14390
Thielavia terrestris
estExt_Genewise1.C_14390
N
0.889
GLRG_02493
Colletotrichum graminicola
GLRG_02493
N
0.874
MGG_03053
Magnaporthe oryzae
MGG_03053
N
0.807
Pa_1_14970
Podospora anserina
Pa_1_14970
N
0.756