CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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e_gw1.69.44.1
(
Volvox carteri
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
e_gw1.69.44.1
T50094_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw1.69.44.1
RRM
246
316
LFICKLNPVTSEEDLEIIFSRFGRVTSCDIIRDWKTGDSLNYGFIGFDSDEACEAAYFKMNNAVIDDRRVR
Links
Other
RRM
family RBPs
Other
Volvox carteri
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
gwH.33.76.1
Chlamydomonas reinhardtii
gwH.33.76.1
N
0.972
estExt_fgenesh3_pm.C_240021
Chlorella NC64A
estExt_fgenesh3_pm.C_240021
N
0.859
estExt_fgeneshCV_pg.C_40316
Chlorella vulgaris
estExt_fgeneshCV_pg.C_40316
N
0.831
e_gw1.4.423.1
Coccomyxa C 169
e_gw1.4.423.1
N
0.831
PPIL4
Gasterosteus aculeatus
ENSGACG00000006639
N
0.718
PPIL4
Takifugu rubripes
ENSTRUG00000006670
N
0.704
PPIL4
Oryzias latipes
ENSORLG00000015310
N
0.704