e_gw.71.47.1 (Nematostella vectensis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 e_gw.71.47.1 T50246_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
e_gw.71.47.1
M233_0.6		 Nematostella vectensis AGAYASA RNAcompete
Ray et al.(2013)
RNCMPT00278 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CNOT4
M147_0.6 		Homo sapiens GACAGA RNAcompete
Ray et al.(2013)
RNCMPT00156 		0.766
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M233_0.6 RRM 51 127

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw.71.47.1 RRM 99 175

Links

Other RRM family RBPs
Other Nematostella vectensis RBPs

43 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Cnot4 Mus musculus ENSMUSG00000038784 I 0.766
CNOT4 Ornithorhynchus anatinus ENSOANG00000005006 I 0.766
CNOT4 Oryctolagus cuniculus ENSOCUG00000013448 I 0.766
CNOT4 Monodelphis domestica ENSMODG00000014068 I 0.766
CNOT4 Macaca mulatta ENSMMUG00000016181 I 0.766
estExt_fgenesh1_pg.C_960014 Capitella teleta estExt_fgenesh1_pg.C_960014 I 0.766
CNOT4 Meleagris gallopavo ENSMGAG00000011788 I 0.766
CNOT4 Microcebus murinus ENSMICG00000001667 I 0.766
ENSPPYG00000018026 Pongo pygmaeus ENSPPYG00000018026 I 0.766
CNOT4 Pan troglodytes ENSPTRG00000019727 I 0.766
CNOT4 Tarsius syrichta ENSTSYG00000000893 I 0.766
CNOT4 Tursiops truncatus ENSTTRG00000005122 I 0.766
cnot4 Xenopus tropicalis ENSXETG00000010594 I 0.766
CNOT4 Taeniopygia guttata ENSTGUG00000009161 I 0.766
CNOT4 Tupaia belangeri ENSTBEG00000002202 I 0.766
CNOT4 Pteropus vampyrus ENSPVAG00000004905 I 0.766
Cnot4 Rattus norvegicus ENSRNOG00000010795 I 0.766
CNOT4 Sorex araneus ENSSARG00000009778 I 0.766
CNOT4 Gorilla gorilla ENSGGOG00000000142 I 0.766
CNOT4 Loxodonta africana ENSLAFG00000000709 I 0.766
CNOT4 Canis familiaris ENSCAFG00000003223 I 0.766
CNOT4 Choloepus hoffmanni ENSCHOG00000010412 I 0.766
Q5ZJC9_CHICK Gallus gallus ENSGALG00000011682 I 0.766
CNOT4 Anolis carolinensis ENSACAG00000011154 I 0.766
Ame_R016242 Ailuropoda melanoleuca Ame_R016242 I 0.766
AAH44088 Xenopus laevis AAH44088 I 0.766
CNOT4 Callithrix jacchus ENSCJAG00000012532 I 0.766
Q5BIS2_BOVIN Bos taurus ENSBTAG00000017919 I 0.766
CNOT4 Homo sapiens ENSG00000080802 D 0.766
CNOT4 Cavia porcellus ENSCPOG00000011526 I 0.766
zgc:63566 Danio rerio ENSDARG00000007639 I 0.766
CNOT4 Equus caballus ENSECAG00000020262 I 0.766
CNOT4 Takifugu rubripes ENSTRUG00000016861 I 0.753
CNOT4 Oryzias latipes ENSORLG00000003727 I 0.753
CNOT4 Danio rerio ENSDARG00000007045 I 0.753
CNOT4 Tetraodon nigroviridis ENSTNIG00000016000 I 0.753
CNOT4 Gasterosteus aculeatus ENSGACG00000004276 I 0.740
nasonia_NCBI_hmm502784 Nasonia vitripennis nasonia_NCBI_hmm502784 I 0.714
111136 Helobdella robusta 111136 I 0.701
NCBI_GNO_5300025 Daphnia pulex NCBI_GNO_5300025 I 0.701
amel4_ncbi_hmm16010 Tribolium castaneum amel4_ncbi_hmm16010 I 0.701
amel4_ncbi_hmm18698 Apis mellifera amel4_ncbi_hmm18698 I 0.701
amel4_ncbi_hmm16010 Apis mellifera amel4_ncbi_hmm16010 I 0.701