NCBI_GNO_5300025 (Daphnia pulex)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 NCBI_GNO_5300025 T53825_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CNOT4
M147_0.6 		Homo sapiens GACAGA RNAcompete
Ray et al.(2013)
RNCMPT00156 		0.870
Cnot4
M008_0.6 		Drosophila melanogaster ASACAHW RNAcompete
Ray et al.(2013)
RNCMPT00008 		0.766
e_gw.71.47.1
M233_0.6 		Nematostella vectensis AGAYASA RNAcompete
Ray et al.(2013)
RNCMPT00278 		0.701
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
NCBI_GNO_5300025 RRM 111 187

Links

Other RRM family RBPs
Other Daphnia pulex RBPs

65 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CNOT4 Microcebus murinus ENSMICG00000001667 I 0.870
Ame_R016242 Ailuropoda melanoleuca Ame_R016242 I 0.870
CNOT4 Monodelphis domestica ENSMODG00000014068 I 0.870
Cnot4 Mus musculus ENSMUSG00000038784 I 0.870
CNOT4 Meleagris gallopavo ENSMGAG00000011788 I 0.870
CNOT4 Loxodonta africana ENSLAFG00000000709 I 0.870
CNOT4 Equus caballus ENSECAG00000020262 I 0.870
CNOT4 Homo sapiens ENSG00000080802 D 0.870
Q5ZJC9_CHICK Gallus gallus ENSGALG00000011682 I 0.870
CNOT4 Gorilla gorilla ENSGGOG00000000142 I 0.870
CNOT4 Ornithorhynchus anatinus ENSOANG00000005006 I 0.870
CNOT4 Oryctolagus cuniculus ENSOCUG00000013448 I 0.870
CNOT4 Taeniopygia guttata ENSTGUG00000009161 I 0.870
CNOT4 Tarsius syrichta ENSTSYG00000000893 I 0.870
CNOT4 Tursiops truncatus ENSTTRG00000005122 I 0.870
cnot4 Xenopus tropicalis ENSXETG00000010594 I 0.870
CNOT4 Tupaia belangeri ENSTBEG00000002202 I 0.870
CNOT4 Sorex araneus ENSSARG00000009778 I 0.870
ENSPPYG00000018026 Pongo pygmaeus ENSPPYG00000018026 I 0.870
CNOT4 Pan troglodytes ENSPTRG00000019727 I 0.870
CNOT4 Pteropus vampyrus ENSPVAG00000004905 I 0.870
Cnot4 Rattus norvegicus ENSRNOG00000010795 I 0.870
zgc:63566 Danio rerio ENSDARG00000007639 I 0.870
CNOT4 Macaca mulatta ENSMMUG00000016181 I 0.870
CNOT4 Canis familiaris ENSCAFG00000003223 I 0.870
Q5BIS2_BOVIN Bos taurus ENSBTAG00000017919 I 0.870
AAH44088 Xenopus laevis AAH44088 I 0.870
CNOT4 Choloepus hoffmanni ENSCHOG00000010412 I 0.870
CNOT4 Anolis carolinensis ENSACAG00000011154 I 0.870
CNOT4 Callithrix jacchus ENSCJAG00000012532 I 0.870
CNOT4 Cavia porcellus ENSCPOG00000011526 I 0.870
CNOT4 Tetraodon nigroviridis ENSTNIG00000016000 I 0.857
CNOT4 Takifugu rubripes ENSTRUG00000016861 I 0.857
CNOT4 Oryzias latipes ENSORLG00000003727 I 0.857
CNOT4 Danio rerio ENSDARG00000007045 I 0.857
CNOT4 Gasterosteus aculeatus ENSGACG00000004276 I 0.844
estExt_fgenesh1_pg.C_960014 Capitella teleta estExt_fgenesh1_pg.C_960014 I 0.831
nasonia_NCBI_hmm502784 Nasonia vitripennis nasonia_NCBI_hmm502784 I 0.805
AGAP009827 Anopheles gambiae AGAP009827 I 0.805
111136 Helobdella robusta 111136 I 0.805
CpipJ_CPIJ019539 Culex pipiens CpipJ_CPIJ019539 I 0.792
CpipJ_CPIJ000383 Culex pipiens CpipJ_CPIJ000383 I 0.792
CPIJ019539 Culex quinquefasciatus CPIJ019539 I 0.792
CPIJ000383 Culex quinquefasciatus CPIJ000383 I 0.792
amel4_ncbi_hmm16010 Apis mellifera amel4_ncbi_hmm16010 I 0.779
amel4_ncbi_hmm18698 Apis mellifera amel4_ncbi_hmm18698 I 0.779
amel4_ncbi_hmm16010 Tribolium castaneum amel4_ncbi_hmm16010 I 0.779
AAEL006664 Aedes aegypti AAEL006664 I 0.779
AAEL009437 Aedes aegypti AAEL009437 I 0.769
GD23693 Drosophila simulans FBgn0195070 I 0.766
GJ21812 Drosophila virilis FBgn0208930 I 0.766
GK18552 Drosophila willistoni FBgn0220550 I 0.766
GE18937 Drosophila yakuba FBgn0236309 I 0.766
GI18285 Drosophila mojavensis FBgn0141024 I 0.766
GH13370 Drosophila grimshawi FBgn0120846 I 0.766
Cnot4 Drosophila melanogaster FBgn0051716 D 0.766
GF15780 Drosophila ananassae FBgn0092804 I 0.766
GG10123 Drosophila erecta FBgn0102434 I 0.766
XP_780160.2 Strongylocentrotus purpuratus XP_780160.2 I 0.747
XP_001179227.1 Strongylocentrotus purpuratus XP_001179227.1 I 0.747
e_gw1.25.349.1 Lottia gigantea e_gw1.25.349.1 I 0.747
ENSCING00000004364 Ciona intestinalis ENSCING00000004364 I 0.727
PHUM247100 Pediculus humanus PHUM247100 I 0.727
Aqu1.226432 Amphimedon queenslandica Aqu1.226432 I 0.727
e_gw.71.47.1 Nematostella vectensis e_gw.71.47.1 D 0.701