111136 (Helobdella robusta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 111136 T48486_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CNOT4
M147_0.6 		Homo sapiens GACAGA RNAcompete
Ray et al.(2013)
RNCMPT00156 		0.844
e_gw.71.47.1
M233_0.6 		Nematostella vectensis AGAYASA RNAcompete
Ray et al.(2013)
RNCMPT00278 		0.701
Cnot4
M008_0.6 		Drosophila melanogaster ASACAHW RNAcompete
Ray et al.(2013)
RNCMPT00008 		0.701
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
111136 RRM 109 185

Links

Other RRM family RBPs
Other Helobdella robusta RBPs

64 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CNOT4 Danio rerio ENSDARG00000007045 I 0.857
CNOT4 Microcebus murinus ENSMICG00000001667 I 0.844
CNOT4 Macaca mulatta ENSMMUG00000016181 I 0.844
Cnot4 Mus musculus ENSMUSG00000038784 I 0.844
CNOT4 Meleagris gallopavo ENSMGAG00000011788 I 0.844
CNOT4 Monodelphis domestica ENSMODG00000014068 I 0.844
CNOT4 Gorilla gorilla ENSGGOG00000000142 I 0.844
zgc:63566 Danio rerio ENSDARG00000007639 I 0.844
CNOT4 Equus caballus ENSECAG00000020262 I 0.844
CNOT4 Homo sapiens ENSG00000080802 D 0.844
CNOT4 Ornithorhynchus anatinus ENSOANG00000005006 I 0.844
CNOT4 Loxodonta africana ENSLAFG00000000709 I 0.844
CNOT4 Oryctolagus cuniculus ENSOCUG00000013448 I 0.844
CNOT4 Taeniopygia guttata ENSTGUG00000009161 I 0.844
CNOT4 Tarsius syrichta ENSTSYG00000000893 I 0.844
CNOT4 Tursiops truncatus ENSTTRG00000005122 I 0.844
cnot4 Xenopus tropicalis ENSXETG00000010594 I 0.844
CNOT4 Tupaia belangeri ENSTBEG00000002202 I 0.844
CNOT4 Sorex araneus ENSSARG00000009778 I 0.844
ENSPPYG00000018026 Pongo pygmaeus ENSPPYG00000018026 I 0.844
CNOT4 Pan troglodytes ENSPTRG00000019727 I 0.844
CNOT4 Pteropus vampyrus ENSPVAG00000004905 I 0.844
Cnot4 Rattus norvegicus ENSRNOG00000010795 I 0.844
CNOT4 Cavia porcellus ENSCPOG00000011526 I 0.844
Q5ZJC9_CHICK Gallus gallus ENSGALG00000011682 I 0.844
Ame_R016242 Ailuropoda melanoleuca Ame_R016242 I 0.844
AAH44088 Xenopus laevis AAH44088 I 0.844
CNOT4 Callithrix jacchus ENSCJAG00000012532 I 0.844
CNOT4 Anolis carolinensis ENSACAG00000011154 I 0.844
estExt_fgenesh1_pg.C_960014 Capitella teleta estExt_fgenesh1_pg.C_960014 I 0.844
CNOT4 Canis familiaris ENSCAFG00000003223 I 0.844
CNOT4 Choloepus hoffmanni ENSCHOG00000010412 I 0.844
Q5BIS2_BOVIN Bos taurus ENSBTAG00000017919 I 0.844
CNOT4 Tetraodon nigroviridis ENSTNIG00000016000 I 0.831
CNOT4 Takifugu rubripes ENSTRUG00000016861 I 0.831
CNOT4 Oryzias latipes ENSORLG00000003727 I 0.831
CNOT4 Gasterosteus aculeatus ENSGACG00000004276 I 0.818
nasonia_NCBI_hmm502784 Nasonia vitripennis nasonia_NCBI_hmm502784 I 0.818
amel4_ncbi_hmm16010 Apis mellifera amel4_ncbi_hmm16010 I 0.805
NCBI_GNO_5300025 Daphnia pulex NCBI_GNO_5300025 I 0.805
amel4_ncbi_hmm16010 Tribolium castaneum amel4_ncbi_hmm16010 I 0.805
amel4_ncbi_hmm18698 Apis mellifera amel4_ncbi_hmm18698 I 0.805
DGIL_AUG5s3525g11t1 Acyrtosiphon pisum DGIL_AUG5s3525g11t1 I 0.779
e_gw1.25.349.1 Lottia gigantea e_gw1.25.349.1 I 0.772
XP_001179227.1 Strongylocentrotus purpuratus XP_001179227.1 I 0.759
XP_780160.2 Strongylocentrotus purpuratus XP_780160.2 I 0.759
PHUM247100 Pediculus humanus PHUM247100 I 0.727
AAEL006664 Aedes aegypti AAEL006664 I 0.714
GK18552 Drosophila willistoni FBgn0220550 I 0.714
AAEL009437 Aedes aegypti AAEL009437 I 0.705
GI18285 Drosophila mojavensis FBgn0141024 I 0.701
GH13370 Drosophila grimshawi FBgn0120846 I 0.701
GD23693 Drosophila simulans FBgn0195070 I 0.701
GJ21812 Drosophila virilis FBgn0208930 I 0.701
GG10123 Drosophila erecta FBgn0102434 I 0.701
GE18937 Drosophila yakuba FBgn0236309 I 0.701
CpipJ_CPIJ000383 Culex pipiens CpipJ_CPIJ000383 I 0.701
CPIJ000383 Culex quinquefasciatus CPIJ000383 I 0.701
CPIJ019539 Culex quinquefasciatus CPIJ019539 I 0.701
AGAP009827 Anopheles gambiae AGAP009827 I 0.701
CpipJ_CPIJ019539 Culex pipiens CpipJ_CPIJ019539 I 0.701
Cnot4 Drosophila melanogaster FBgn0051716 D 0.701
e_gw.71.47.1 Nematostella vectensis e_gw.71.47.1 D 0.701
GF15780 Drosophila ananassae FBgn0092804 I 0.701