CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
estExt_fgenesh1_pg.C_1590030
(
Capitella teleta
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
estExt_fgenesh1_pg.C_1590030
T50507_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh1_pg.C_1590030
RRM
14
79
IYVGDLPRDASERELERAFSYYGPLKNVWVARNPPGFAFIEYEDPRDADDAVRSLDGSTICGVRAR
Links
Other
RRM
family RBPs
Other
Capitella teleta
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_fgenesh1_pm.C_10147
Daphnia pulex
estExt_fgenesh1_pm.C_10147
I
0.742
PHUM565080
Pediculus humanus
PHUM565080
I
0.727
ENSCING00000011663
Ciona intestinalis
ENSCING00000011663
I
0.727
nasonia_NCBI_hmm124154
Nasonia vitripennis
nasonia_NCBI_hmm124154
I
0.727
ENSCSAVG00000002676
Ciona savignyi
ENSCSAVG00000002676
I
0.712