ENSCING00000011663 (Ciona intestinalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCING00000011663 T35430_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Rbp1
M336_0.6 		Drosophila melanogaster Sequence logo not available AUCYNNA SELEX
Cook et al.(2011)
804_7664738.1 		0.742
Rbp1
M335_0.6 		Drosophila melanogaster Sequence logo not available DCADCUUUA SELEX
Cook et al.(2011)
804_7664738 		0.742
Rbp1
M056_0.6 		Drosophila melanogaster WCAACRR RNAcompete
Ray et al.(2013)
RNCMPT00058 		0.742
Rbp1-like
M121_0.6 		Drosophila melanogaster AUCADCR RNAcompete
Ray et al.(2013)
RNCMPT00127 		0.727
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCINP00000022203 RRM 13 78
ENSCINP00000022204 RRM 13 78

Links

Other RRM family RBPs
Other Ciona intestinalis RBPs

80 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCSAVG00000002676 Ciona savignyi ENSCSAVG00000002676 I 0.939
Sfrs3 Rattus norvegicus ENSRNOG00000000520 I 0.788
SRSF3 Spermophilus tridecemlineatus ENSSTOG00000014280 I 0.788
SRSF3 Tupaia belangeri ENSTBEG00000012272 I 0.788
SRSF3 Pteropus vampyrus ENSPVAG00000014621 I 0.788
ENSPPYG00000016548 Pongo pygmaeus ENSPPYG00000016548 I 0.788
SRSF3 Ochotona princeps ENSOPRG00000006006 I 0.788
SRSF3 Oryzias latipes ENSORLG00000000292 I 0.788
SRSF3 Oryzias latipes ENSORLG00000020054 I 0.788
SFRS3 Taeniopygia guttata ENSTGUG00000000928 I 0.788
XR_022443.1 Pan troglodytes ENSPTRG00000018106 I 0.788
SRSF3 Tursiops truncatus ENSTTRG00000013447 I 0.788
SRSF3 Anolis carolinensis ENSACAG00000016637 I 0.788
SFRS3_BOVIN Bos taurus ENSBTAG00000040006 I 0.788
Q9XSU6_CANFA Canis familiaris ENSCAFG00000001414 I 0.788
nasonia_NCBI_hmm124154 Nasonia vitripennis nasonia_NCBI_hmm124154 I 0.788
AAH46661 Xenopus laevis AAH46661 I 0.788
SRSF3 Oryctolagus cuniculus ENSOCUG00000006684 I 0.788
SRSF3 Vicugna pacos ENSVPAG00000005481 I 0.788
Ame_R002060 Ailuropoda melanoleuca Ame_R002060 I 0.788
SRSF3 Tetraodon nigroviridis ENSTNIG00000001003 I 0.788
srsf3 Xenopus tropicalis ENSXETG00000001701 I 0.788
SRSF3 Homo sapiens ENSG00000112081 I 0.788
SRSF3 Gasterosteus aculeatus ENSGACG00000001042 N 0.788
SRSF3 Cavia porcellus ENSCPOG00000003722 I 0.788
SRSF3 Echinops telfairi ENSETEG00000010117 I 0.788
srsf3a Danio rerio ENSDARG00000025397 I 0.788
LOC100053336 Equus caballus ENSECAG00000018741 I 0.788
ENSDORG00000012283 Dipodomys ordii ENSDORG00000012283 I 0.788
srsf3b Danio rerio ENSDARG00000059360 I 0.788
SFRS3 Gallus gallus ENSGALG00000000533 I 0.788
SRSF3 Felis catus ENSFCAG00000001084 I 0.788
SRSF3 Microcebus murinus ENSMICG00000004674 I 0.788
SRSF3 Gorilla gorilla ENSGGOG00000017186 I 0.788
Srsf3 Mus musculus ENSMUSG00000071172 I 0.788
SRSF3 Macaca mulatta ENSMMUG00000014306 I 0.788
SRSF3 Monodelphis domestica ENSMODG00000013539 I 0.788
SRSF3 Meleagris gallopavo ENSMGAG00000002503 I 0.788
ENSLAFG00000018193 Loxodonta africana ENSLAFG00000018193 I 0.788
LOC100408013 Callithrix jacchus ENSCJAG00000016062 I 0.788
SRSF3 Tetraodon nigroviridis ENSTNIG00000014643 N 0.773
SRSF3 Sus scrofa ENSSSCG00000001564 I 0.773
Gm12355 Mus musculus ENSMUSG00000078134 I 0.773
estExt_fgenesh1_pm.C_10147 Daphnia pulex estExt_fgenesh1_pm.C_10147 I 0.758
PHUM565080 Pediculus humanus PHUM565080 I 0.758
AAEL001356 Aedes aegypti AAEL001356 I 0.758
AGAP007325 Anopheles gambiae AGAP007325 I 0.758
GK13897 Drosophila willistoni FBgn0215904 I 0.758
Rbp1 Drosophila melanogaster FBgn0260944 D 0.742
GE26048 Drosophila yakuba FBgn0243090 I 0.742
CPIJ003074 Culex quinquefasciatus CPIJ003074 I 0.742
nasonia_NCBI_hmm78264 Nasonia vitripennis nasonia_NCBI_hmm78264 I 0.742
CpipJ_CPIJ003074 Culex pipiens CpipJ_CPIJ003074 I 0.742
GM23896 Drosophila sechellia FBgn0178761 I 0.742
GG17683 Drosophila erecta FBgn0109905 I 0.742
GF17902 Drosophila ananassae FBgn0094920 I 0.742
SRSF3 Gasterosteus aculeatus ENSGACG00000001473 N 0.742
ENSLAFG00000026731 Loxodonta africana ENSLAFG00000026731 N 0.742
GM13734 Drosophila sechellia FBgn0168665 N 0.742
GI23736 Drosophila mojavensis FBgn0146461 I 0.742
GD18708 Drosophila simulans FBgn0190229 I 0.742
GF19500 Drosophila ananassae FBgn0096507 I 0.727
GG19507 Drosophila erecta FBgn0111709 I 0.727
GJ10582 Drosophila virilis FBgn0197862 I 0.727
GA15173-RA Drosophila pseudoobscura FBgn0075198 I 0.727
GK16401 Drosophila willistoni FBgn0218403 I 0.727
GE16161 Drosophila yakuba FBgn0233705 I 0.727
Rbp1-like Drosophila melanogaster FBgn0030479 D 0.727
amel4_ncbi_hmm65494 Apis mellifera amel4_ncbi_hmm65494 I 0.727
amel4_ncbi_hmm63829 Apis mellifera amel4_ncbi_hmm63829 I 0.727
PHUM357390 Pediculus humanus PHUM357390 I 0.727
GL26725 Drosophila persimilis FBgn0164306 I 0.727
estExt_fgenesh1_pg.C_1590030 Capitella teleta estExt_fgenesh1_pg.C_1590030 N 0.727
GJ14774 Drosophila virilis FBgn0201978 I 0.727
GI15337 Drosophila mojavensis FBgn0138086 I 0.727
GH24472 Drosophila grimshawi FBgn0131928 I 0.727
e_gw1.25.110.1 Daphnia pulex e_gw1.25.110.1 N 0.712
PASA_GEN_2500115 Daphnia pulex PASA_GEN_2500115 I 0.712
gw.267.29.1 Branchiostoma floridae gw.267.29.1 N 0.712