estExt_fgenesh1_pm.C_10147 (Daphnia pulex)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_fgenesh1_pm.C_10147 T50683_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Rbp1-like
M121_0.6 		Drosophila melanogaster AUCADCR RNAcompete
Ray et al.(2013)
RNCMPT00127 		0.742
Rbp1
M336_0.6 		Drosophila melanogaster Sequence logo not available AUCYNNA SELEX
Cook et al.(2011)
804_7664738.1 		0.712
Rbp1
M335_0.6 		Drosophila melanogaster Sequence logo not available DCADCUUUA SELEX
Cook et al.(2011)
804_7664738 		0.712
Rbp1
M056_0.6 		Drosophila melanogaster WCAACRR RNAcompete
Ray et al.(2013)
RNCMPT00058 		0.712
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh1_pm.C_10147 RRM 14 79

Links

Other RRM family RBPs
Other Daphnia pulex RBPs

80 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
nasonia_NCBI_hmm124154 Nasonia vitripennis nasonia_NCBI_hmm124154 I 0.818
Srsf3 Mus musculus ENSMUSG00000071172 I 0.803
SRSF3 Monodelphis domestica ENSMODG00000013539 I 0.803
SRSF3 Oryctolagus cuniculus ENSOCUG00000006684 I 0.803
SRSF3 Ochotona princeps ENSOPRG00000006006 I 0.803
SRSF3 Oryzias latipes ENSORLG00000000292 I 0.803
SRSF3 Macaca mulatta ENSMMUG00000014306 I 0.803
ENSPPYG00000016548 Pongo pygmaeus ENSPPYG00000016548 I 0.803
SRSF3 Gorilla gorilla ENSGGOG00000017186 I 0.803
ENSLAFG00000018193 Loxodonta africana ENSLAFG00000018193 I 0.803
SRSF3 Meleagris gallopavo ENSMGAG00000002503 I 0.803
SRSF3 Microcebus murinus ENSMICG00000004674 I 0.803
SFRS3 Gallus gallus ENSGALG00000000533 I 0.803
XR_022443.1 Pan troglodytes ENSPTRG00000018106 I 0.803
SRSF3 Tursiops truncatus ENSTTRG00000013447 I 0.803
SRSF3 Vicugna pacos ENSVPAG00000005481 I 0.803
srsf3 Xenopus tropicalis ENSXETG00000001701 I 0.803
PHUM565080 Pediculus humanus PHUM565080 I 0.803
SRSF3 Tetraodon nigroviridis ENSTNIG00000001003 I 0.803
SFRS3 Taeniopygia guttata ENSTGUG00000000928 I 0.803
SRSF3 Pteropus vampyrus ENSPVAG00000014621 I 0.803
Sfrs3 Rattus norvegicus ENSRNOG00000000520 I 0.803
SRSF3 Spermophilus tridecemlineatus ENSSTOG00000014280 I 0.803
SRSF3 Tupaia belangeri ENSTBEG00000012272 I 0.803
SRSF3 Homo sapiens ENSG00000112081 I 0.803
Gm12355 Mus musculus ENSMUSG00000078134 I 0.803
SRSF3 Felis catus ENSFCAG00000001084 I 0.803
Ame_R002060 Ailuropoda melanoleuca Ame_R002060 I 0.803
SRSF3 Cavia porcellus ENSCPOG00000003722 I 0.803
LOC100408013 Callithrix jacchus ENSCJAG00000016062 I 0.803
SFRS3_BOVIN Bos taurus ENSBTAG00000040006 I 0.803
SRSF3 Anolis carolinensis ENSACAG00000016637 I 0.803
Q9XSU6_CANFA Canis familiaris ENSCAFG00000001414 I 0.803
srsf3b Danio rerio ENSDARG00000059360 I 0.803
ENSDORG00000012283 Dipodomys ordii ENSDORG00000012283 I 0.803
SRSF3 Echinops telfairi ENSETEG00000010117 I 0.803
LOC100053336 Equus caballus ENSECAG00000018741 I 0.803
AAH46661 Xenopus laevis AAH46661 I 0.788
amel4_ncbi_hmm63829 Apis mellifera amel4_ncbi_hmm63829 I 0.788
SRSF3 Tetraodon nigroviridis ENSTNIG00000014643 N 0.788
amel4_ncbi_hmm65494 Apis mellifera amel4_ncbi_hmm65494 I 0.788
GM13734 Drosophila sechellia FBgn0168665 N 0.788
SRSF3 Sus scrofa ENSSSCG00000001564 I 0.788
SRSF3 Oryzias latipes ENSORLG00000020054 I 0.788
srsf3a Danio rerio ENSDARG00000025397 I 0.788
SRSF3 Gasterosteus aculeatus ENSGACG00000001042 N 0.788
SRSF3 Gasterosteus aculeatus ENSGACG00000001473 N 0.773
nasonia_NCBI_hmm78264 Nasonia vitripennis nasonia_NCBI_hmm78264 I 0.773
PHUM357390 Pediculus humanus PHUM357390 I 0.773
ENSCING00000011663 Ciona intestinalis ENSCING00000011663 I 0.758
ENSLAFG00000026731 Loxodonta africana ENSLAFG00000026731 N 0.758
ENSCSAVG00000002676 Ciona savignyi ENSCSAVG00000002676 I 0.758
GA15173-RA Drosophila pseudoobscura FBgn0075198 I 0.742
Rbp1-like Drosophila melanogaster FBgn0030479 D 0.742
GI15337 Drosophila mojavensis FBgn0138086 I 0.742
GF19500 Drosophila ananassae FBgn0096507 I 0.742
GE16161 Drosophila yakuba FBgn0233705 I 0.742
GH24472 Drosophila grimshawi FBgn0131928 I 0.742
estExt_fgenesh1_pg.C_1590030 Capitella teleta estExt_fgenesh1_pg.C_1590030 N 0.742
PASA_GEN_2500115 Daphnia pulex PASA_GEN_2500115 I 0.742
GJ14774 Drosophila virilis FBgn0201978 I 0.742
GG19507 Drosophila erecta FBgn0111709 I 0.742
GK16401 Drosophila willistoni FBgn0218403 I 0.742
GL26725 Drosophila persimilis FBgn0164306 I 0.742
AAEL001356 Aedes aegypti AAEL001356 I 0.727
SRSF7 Spermophilus tridecemlineatus ENSSTOG00000004389 N 0.727
AGAP007325 Anopheles gambiae AGAP007325 I 0.727
SRSF3 Erinaceus europaeus ENSEEUG00000001119 N 0.712
GE26048 Drosophila yakuba FBgn0243090 I 0.712
Rbp1 Drosophila melanogaster FBgn0260944 D 0.712
SRSF3 Otolemur garnettii ENSOGAG00000000502 N 0.712
SRSF3 Choloepus hoffmanni ENSCHOG00000002515 N 0.712
SRSF3 Myotis lucifugus ENSMLUG00000010671 N 0.712
GK13897 Drosophila willistoni FBgn0215904 I 0.712
CpipJ_CPIJ003074 Culex pipiens CpipJ_CPIJ003074 I 0.712
GF17902 Drosophila ananassae FBgn0094920 I 0.712
GM23896 Drosophila sechellia FBgn0178761 I 0.712
GD18708 Drosophila simulans FBgn0190229 I 0.712
GG17683 Drosophila erecta FBgn0109905 I 0.712
CPIJ003074 Culex quinquefasciatus CPIJ003074 I 0.712