CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_fgenesh3_kg.C_110041
(
Neurospora discreta
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
estExt_fgenesh3_kg.C_110041
T50951_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh3_kg.C_110041
RRM
72
142
IVVSNLPKDVSEGQIKEYFQQAIGQVKRVELSYGPGGASRGIAHITFHHADGATKAYNTLNGLLIDNRPVK
Links
Other
RRM
family RBPs
Other
Neurospora discreta
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_Genewise1Plus.C_130242
Neurospora tetrasperma
estExt_Genewise1Plus.C_130242
N
0.986
NCU01793
Neurospora crassa
NCU01793
N
0.986
estExt_fgenesh2_kg.C_60127
Thielavia terrestris
estExt_fgenesh2_kg.C_60127
N
0.845
Pa_3_8710
Podospora anserina
Pa_3_8710
N
0.845
fgenesh1_kg.7_#_199_#_2561_2_CCWO_CCWP_EXTA
Myceliophthora thermophila
fgenesh1_kg.7_#_199_#_2561_2_CCWO_CCWP_EXTA
N
0.817
CHGG_07888
Chaetomium globosum
CHGG_07888
N
0.761
MGG_06668
Magnaporthe oryzae
MGG_06668
N
0.761
FVEG_11504
Fusarium verticillioides
FVEG_11504
N
0.718