CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MGG_06668
(
Magnaporthe oryzae
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
MGG_06668
T29768_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
MGG_06668T0
RRM
72
142
VVVSNMPKDVSEAQIKEYFGQSVGPVKRVEISYGPGGVSRGIATVTFAHADGASKAFAELNGLLIDNKPVK
Links
Other
RRM
family RBPs
Other
Magnaporthe oryzae
RBPs
9 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
fgenesh1_kg.7_#_199_#_2561_2_CCWO_CCWP_EXTA
Myceliophthora thermophila
fgenesh1_kg.7_#_199_#_2561_2_CCWO_CCWP_EXTA
N
0.859
CHGG_07888
Chaetomium globosum
CHGG_07888
N
0.831
Pa_3_8710
Podospora anserina
Pa_3_8710
N
0.817
estExt_fgenesh2_kg.C_60127
Thielavia terrestris
estExt_fgenesh2_kg.C_60127
N
0.803
NCU01793
Neurospora crassa
NCU01793
N
0.761
estExt_Genewise1Plus.C_130242
Neurospora tetrasperma
estExt_Genewise1Plus.C_130242
N
0.761
estExt_fgenesh3_kg.C_110041
Neurospora discreta
estExt_fgenesh3_kg.C_110041
N
0.761
GLRG_05141
Colletotrichum graminicola
GLRG_05141
N
0.732
FVEG_11504
Fusarium verticillioides
FVEG_11504
N
0.732