CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Glyma02g15810.1
(
Glycine max
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Glyma02g15810.1
T52602_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Glyma02g15810.1
RRM
89
158
LFVRGLAGETTTETLRSVFSGFGELDEAIVIMDKATGRSKGYGFVVFRHVDGAILALKDPSKKIDGRMTV
Glyma02g15810.1
RRM
177
245
VFVGNVPFEISSERLLDEFLKFGEVEEGPLGFDKSSGKSRGFAFFVYKTEEGARASLVEPLKTIEGHQY
Links
Other
RRM
family RBPs
Other
Glycine max
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Glyma07g32660.1
Glycine max
Glyma07g32660.1
N
0.950
LjT18N19.10.nd
Lotus japonicus
LjT18N19.10.nd
N
0.893
Medtr4g127970
Medicago truncatula
Medtr4g127970
N
0.800
PK03611.1
Cannabis sativa
PK03611.1
N
0.729
mgf011517m
Mimulus guttatus
mgf011517m
N
0.711
mgf005844m
Mimulus guttatus
mgf005844m
N
0.711
MDP0000709988
Malus x domestica
MDP0000709988
N
0.707
BRADI2G43460
Brachypodium distachyon
BRADI2G43460
N
0.700