CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Glyma07g32660.1
(
Glycine max
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Glyma07g32660.1
T52702_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Glyma07g32660.1
RRM
85
154
LFVRGLAGETTTETLRGVFSAFGELDEAIVIIDKATGRSKGYGFVVFSHVDGAILALKEPSKKIDGRMTV
Glyma07g32660.1
RRM
173
242
VFVGNVPFEISSERLLDEFLKFGEVEEGPLGFDKSSGKSRGFAFFVYKTEEGARASLVEPLKTIEGHQVI
Links
Other
RRM
family RBPs
Other
Glycine max
RBPs
13 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Glyma02g15810.1
Glycine max
Glyma02g15810.1
N
0.950
LjT18N19.10.nd
Lotus japonicus
LjT18N19.10.nd
N
0.900
Medtr4g127970
Medicago truncatula
Medtr4g127970
N
0.814
PK03611.1
Cannabis sativa
PK03611.1
N
0.736
MDP0000709988
Malus x domestica
MDP0000709988
N
0.721
mgf011517m
Mimulus guttatus
mgf011517m
N
0.718
mgf005844m
Mimulus guttatus
mgf005844m
N
0.718
29900.m001607
Ricinus communis
29900.m001607
N
0.707
BRADI2G43460
Brachypodium distachyon
BRADI2G43460
N
0.707
mgf018937m
Mimulus guttatus
mgf018937m
N
0.704
GRMZM2G049866
Zea mays
GRMZM2G049866
N
0.700
SB03G027820
Sorghum bicolor
Sb03g027820
N
0.700
LOC_Os01g42820
Oryza sativa
LOC_Os01g42820
N
0.700