CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Glyma04g37810.1
(
Glycine max
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Glyma04g37810.1
T52647_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Glyma04g37810.1
RRM
226
291
LFVRNINSNVEDSELKALFEQYGNIRTIYTACKYRGFVMISYYDLRAAQNAMKALQNRSLRSRKLD
Glyma04g37810.1
RRM
311
376
LMISNLDSSVLDDELKQIFGFYGEIREIYEYPQLNHVKFIEFYDVRAAEASLRALNGICFAGKHIK
Links
Other
RRM
family RBPs
Other
Glycine max
RBPs
12 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Glyma06g17250.1
Glycine max
Glyma06g17250.1
N
0.977
Medtr4g152330
Medicago truncatula
Medtr4g152330
N
0.780
GSVIVG00000782001
Vitis vinifera
GSVIVG00000782001
N
0.742
Cucsa.185450
Cucumis sativus
Cucsa.185450
N
0.727
PDK_20s1502541g003
Phoenix dactylifera
PDK_20s1502541g003
N
0.727
B9IFK9_POPTR
Populus trichocarpa
POPTR_0015s11730
N
0.722
MDP0000276328
Malus x domestica
MDP0000276328
N
0.720
MDP0000235584
Malus x domestica
MDP0000235584
N
0.720
MDP0000130792
Malus x domestica
MDP0000130792
N
0.712
cassava6431.valid.m1
Manihot esculenta
cassava6431.valid.m1
N
0.705
30128.m008555
Ricinus communis
30128.m008555
N
0.705
cassava6430.valid.m1
Manihot esculenta
cassava6430.valid.m1
N
0.705