CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GRMZM2G054468
(
Zea mays
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
GRMZM2G054468
T54050_0.6
MaizeSequence (2009-Oct-16)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GRMZM2G054468_P01
RRM
111
180
LYISNLHYGVTSEDLQELFSEMGHLKHCAVHYDSYRHPTGSAEVIFTRRSEALAALKRYNNMRLDGKAMK
Links
Other
RRM
family RBPs
Other
Zea mays
RBPs
13 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SB10G009240
Sorghum bicolor
Sb10g009240
N
0.957
LOC_Os06g14470
Oryza sativa
LOC_Os06g14470
N
0.886
BRADI1G44147
Brachypodium distachyon
BRADI1G44147
N
0.886
BGIOSIBCE021374
Oryza indica
BGIOSIBCE021374
N
0.886
SB07G020860
Sorghum bicolor
Sb07g020860
N
0.743
GRMZM2G171921
Zea mays
GRMZM2G171921
N
0.743
LOC_Os08g33120
Oryza sativa
LOC_Os08g33120
N
0.729
BGIOSIBCE027930
Oryza indica
BGIOSIBCE027930
N
0.729
BRADI3G36320
Brachypodium distachyon
BRADI3G36320
N
0.714
Glyma18g04530.1
Glycine max
Glyma18g04530.1
N
0.700
Glyma11g33670.1
Glycine max
Glyma11g33670.1
N
0.700
Medtr3g087640
Medicago truncatula
Medtr3g087640
N
0.700
Medtr3g087650
Medicago truncatula
Medtr3g087650
N
0.700