BGIOSIBCE027930 (Oryza indica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 BGIOSIBCE027930 T33050_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BGIOSIBCE027930 RRM 80 149

Links

Other RRM family RBPs
Other Oryza indica RBPs

69 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os08g33120 Oryza sativa LOC_Os08g33120 N 1.000
GRMZM2G171921 Zea mays GRMZM2G171921 N 0.986
SB07G020860 Sorghum bicolor Sb07g020860 N 0.986
BRADI3G36320 Brachypodium distachyon BRADI3G36320 N 0.943
MDP0000202749 Malus x domestica MDP0000202749 N 0.814
ppa009623m Prunus persica ppa009623m N 0.814
cassava6245.valid.m1 Manihot esculenta cassava6245.valid.m1 N 0.800
cassava6246.valid.m1 Manihot esculenta cassava6246.valid.m1 N 0.800
cassava9472.m1 Manihot esculenta cassava9472.m1 N 0.800
cassava9473.m1 Manihot esculenta cassava9473.m1 N 0.800
ppa010358m Prunus persica ppa010358m N 0.800
cassava30012.valid.m1 Manihot esculenta cassava30012.valid.m1 N 0.786
XM_002873013.1 Arabidopsis lyrata fgenesh2_kg.6__165__AT5G02530.1 N 0.786
cassava37747.valid.m1 Manihot esculenta cassava37747.valid.m1 N 0.786
cassava30010.valid.m1 Manihot esculenta cassava30010.valid.m1 N 0.786
cassava37746.valid.m1 Manihot esculenta cassava37746.valid.m1 N 0.786
cassava30011.valid.m1 Manihot esculenta cassava30011.valid.m1 N 0.786
Glyma11g33670.1 Glycine max Glyma11g33670.1 N 0.786
MDP0000153894 Malus x domestica MDP0000153894 N 0.786
Glyma18g04530.1 Glycine max Glyma18g04530.1 N 0.786
GSVIVG00025009001 Vitis vinifera GSVIVG00025009001 N 0.786
AT5G02530 Arabidopsis thaliana AT5G02530-TAIR-G N 0.786
PK16300.1 Cannabis sativa PK16300.1 N 0.786
Cucsa.137040 Cucumis sativus Cucsa.137040 N 0.786
Medtr4g078540 Medicago truncatula Medtr4g078540 N 0.786
MDP0000119945 Malus x domestica MDP0000119945 N 0.786
MDP0000251188 Malus x domestica MDP0000251188 N 0.786
mgf010207m Mimulus guttatus mgf010207m N 0.771
Glyma11g15040.1 Glycine max Glyma11g15040.1 N 0.771
BRADI4G45380 Brachypodium distachyon BRADI4G45380 N 0.771
GSVIVG00030785001 Vitis vinifera GSVIVG00030785001 N 0.771
MDP0000299639 Malus x domestica MDP0000299639 N 0.771
MDP0000275263 Malus x domestica MDP0000275263 N 0.771
Glyma12g07010.1 Glycine max Glyma12g07010.1 N 0.771
29876.m000260 Ricinus communis 29876.m000260 N 0.771
Medtr3g087640 Medicago truncatula Medtr3g087640 N 0.757
Medtr3g087650 Medicago truncatula Medtr3g087650 N 0.757
Glyma13g40930.1 Glycine max Glyma13g40930.1 N 0.757
Cucsa.172290 Cucumis sativus Cucsa.172290 N 0.757
B9GUT0_POPTR Populus trichocarpa POPTR_0017s02890 N 0.757
cassava35480.valid.m1 Manihot esculenta cassava35480.valid.m1 N 0.757
SB10G009240 Sorghum bicolor Sb10g009240 N 0.757
29005.m000257 Ricinus communis 29005.m000257 N 0.743
LOC_Os12g01010 Oryza sativa LOC_Os12g01010 N 0.743
LOC_Os06g14470 Oryza sativa LOC_Os06g14470 N 0.743
BGIOSIBCE021374 Oryza indica BGIOSIBCE021374 N 0.743
AT5G59950 Arabidopsis thaliana AT5G59950-TAIR-G N 0.743
XM_002864614.1 Arabidopsis lyrata fgenesh2_kg.8__1946__AT5G59950.1 N 0.743
GRMZM2G166780 Zea mays GRMZM2G166780 N 0.743
SB01G039330 Sorghum bicolor Sb01g039330 N 0.743
mgf000319m Mimulus guttatus mgf000319m N 0.743
GRMZM2G157329 Zea mays GRMZM2G157329 N 0.743
B9GER3_POPTR Populus trichocarpa POPTR_0001s24350 N 0.729
LOC_Os11g01020 Oryza sativa LOC_Os11g01020 N 0.729
e_gw1.77.52.1 Physcomitrella patens e_gw1.77.52.1 N 0.729
BGIOSIBCE007269 Oryza indica BGIOSIBCE007269 N 0.729
B9H3A7_POPTR Populus trichocarpa POPTR_0004s08540 N 0.729
BGIOSIBCE007271 Oryza indica BGIOSIBCE007271 N 0.729
cassava6599.valid.m1 Manihot esculenta cassava6599.valid.m1 N 0.729
e_gw1.4.224.1 Physcomitrella patens e_gw1.4.224.1 N 0.729
B9NB27_POPTR Populus trichocarpa POPTR_0016s11470 N 0.729
GRMZM2G054468 Zea mays GRMZM2G054468 N 0.729
BGIOSIBCE010579 Oryza indica BGIOSIBCE010579 N 0.714
BRADI1G44147 Brachypodium distachyon BRADI1G44147 N 0.714
LOC_Os03g17010 Oryza sativa LOC_Os03g17010 N 0.714
B9HTL2_POPTR Populus trichocarpa POPTR_0010s21510 N 0.714
Cucsa.213420 Cucumis sativus Cucsa.213420 N 0.714
estExt_fgenesh1_pg.C_3900014 Physcomitrella patens estExt_fgenesh1_pg.C_3900014 N 0.700
fgenesh1_pm.scaffold_57000010 Physcomitrella patens fgenesh1_pm.scaffold_57000010 N 0.700