CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Medtr7g010320
(
Medicago truncatula
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Medtr7g010320
T54576_0.6
PlantGDB (2010-Oct-15)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Medtr7g010320.1
RRM
70
119
VVFSAFGFVHKIATFEKTAGFQALIQFTDAETAASARDALDGRSIPRQNY
Medtr7g010320.1
RRM
212
274
SIENMQYAVTVDVINTVFSAFGTVQKIAMFEKNGQTQALIQYPDVTTAAAAREALEGHCIYDG
Medtr7g010320.2
RRM
70
119
VVFSAFGFVHKIATFEKTAGFQALIQFTDAETAASARDALDGRSIPRQNY
Medtr7g010320.2
RRM
212
274
SIENMQYAVTVDVINTVFSAFGTVQKIAMFEKNGQTQALIQYPDVTTAAAAREALEGHCIYDG
Medtr7g010320.3
RRM
70
119
VVFSAFGFVHKIATFEKTAGFQALIQFTDAETAASARDALDGRSIPRQNY
Medtr7g010320.3
RRM
212
254
SIENMQYAVTVDVINTVFSAFGTVQKIAMFEKNGQTQALIQYP
Links
Other
RRM
family RBPs
Other
Medicago truncatula
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC_Os08g33830
Oryza sativa
LOC_Os08g33830
I
0.782
ATPTB2
Arabidopsis thaliana
AT5G53180-TAIR-G
I
0.772
LOC_Os01g43170
Oryza sativa
LOC_Os01g43170
I
0.717