LOC_Os08g33830 (Oryza sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LOC_Os08g33830 T45111_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
e_gw1.81.40.1
M185_0.6 		Physcomitrella patens RACCUW RNAcompete
Ray et al.(2013)
RNCMPT00206 		0.787
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os08g33830.1 RRM 19 76
LOC_Os08g33830.1 RRM 117 180
LOC_Os08g33830.1 RRM 248 310
LOC_Os08g33830.2 RRM 25 80
LOC_Os08g33830.2 RRM 148 210

Links

Other RRM family RBPs
Other Oryza sativa RBPs

46 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SB07G021250 Sorghum bicolor Sb07g021250 I 0.973
GRMZM2G178169 Zea mays GRMZM2G178169 I 0.973
BRADI3G36770 Brachypodium distachyon BRADI3G36770 I 0.952
GSVIVG00011438001 Vitis vinifera GSVIVG00011438001 I 0.862
LOC_Os03g25980 Oryza sativa LOC_Os03g25980 I 0.856
BRADI1G61200 Brachypodium distachyon BRADI1G61200 I 0.850
cassava3019.m1 Manihot esculenta cassava3019.m1 I 0.840
chr1.CM0141.270.nc Lotus japonicus chr1.CM0141.270.nc I 0.834
A9PHS8_POPTR Populus trichocarpa POPTR_0004s12210 I 0.830
28649.m000223 Ricinus communis 28649.m000223 I 0.829
Glyma18g49580.1 Glycine max Glyma18g49580.1 I 0.824
SB01G034060 Sorghum bicolor Sb01g034060 I 0.819
ppa004961m Prunus persica ppa004961m I 0.819
Glyma09g37080.1 Glycine max Glyma09g37080.1 I 0.819
PK14390.1 Cannabis sativa PK14390.1 I 0.819
XM_002884247.1 Arabidopsis lyrata scaffold_300118.1 I 0.811
MDP0000796160 Malus x domestica MDP0000796160 I 0.809
BGIOSIBCE011312 Oryza indica BGIOSIBCE011312 I 0.808
PTB Arabidopsis thaliana AT3G01150-TAIR-G I 0.806
B9IK00_POPTR Populus trichocarpa POPTR_0017s12160 I 0.803
Glyma14g30490.1 Glycine max Glyma14g30490.1 I 0.801
Cucsa.202010 Cucumis sativus Cucsa.202010 I 0.796
Glyma06g13130.1 Glycine max Glyma06g13130.1 I 0.796
Glyma04g41660.1 Glycine max Glyma04g41660.1 I 0.790
ppa005791m Prunus persica ppa005791m I 0.790
GSVIVG00028703001 Vitis vinifera GSVIVG00028703001 I 0.790
30169.m006527 Ricinus communis 30169.m006527 I 0.790
gw1.326.8.1 Physcomitrella patens gw1.326.8.1 I 0.787
e_gw1.81.40.1 Physcomitrella patens e_gw1.81.40.1 D 0.787
Medtr7g010320 Medicago truncatula Medtr7g010320 N 0.782
cassava7218.valid.m1 Manihot esculenta cassava7218.valid.m1 I 0.780
cassava7219.valid.m1 Manihot esculenta cassava7219.valid.m1 I 0.780
ATPTB2 Arabidopsis thaliana AT5G53180-TAIR-G I 0.780
cassava29285.valid.m1 Manihot esculenta cassava29285.valid.m1 I 0.780
Glyma13g08170.1 Glycine max Glyma13g08170.1 I 0.780
Medtr3g124540 Medicago truncatula Medtr3g124540 I 0.775
XM_002865910.1 Arabidopsis lyrata fgenesh2_kg.8__1206__AT5G53180.1 I 0.774
e_gw1.30.357.1 Selaginella moellendorfii e_gw1.30.357.1 I 0.774
SB03G028150 Sorghum bicolor Sb03g028150 I 0.769
PDK_20s1513061g004 Phoenix dactylifera PDK_20s1513061g004 I 0.766
MDP0000269393 Malus x domestica MDP0000269393 I 0.763
LOC_Os01g43170 Oryza sativa LOC_Os01g43170 I 0.762
GRMZM2G058039 Zea mays GRMZM2G058039 I 0.761
mgf005649m Mimulus guttatus mgf005649m I 0.754
BRADI2G43760 Brachypodium distachyon BRADI2G43760 I 0.741
mgf001230m Mimulus guttatus mgf001230m I 0.739