LOC_Os01g43170 (Oryza sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LOC_Os01g43170 T44928_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
e_gw1.81.40.1
M185_0.6 		Physcomitrella patens RACCUW RNAcompete
Ray et al.(2013)
RNCMPT00206 		0.761
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os01g43170.1 RRM 18 74
LOC_Os01g43170.1 RRM 117 179
LOC_Os01g43170.1 RRM 242 304
LOC_Os01g43170.2 RRM 24 73
LOC_Os01g43170.2 RRM 136 198
LOC_Os01g43170.3 RRM 23 72
LOC_Os01g43170.3 RRM 135 197

Links

Other RRM family RBPs
Other Oryza sativa RBPs

48 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SB03G028150 Sorghum bicolor Sb03g028150 I 0.909
BRADI2G43760 Brachypodium distachyon BRADI2G43760 I 0.908
GRMZM2G058039 Zea mays GRMZM2G058039 I 0.883
BGIOSIBCE002789 Oryza indica BGIOSIBCE002789 N 0.880
cassava7219.valid.m1 Manihot esculenta cassava7219.valid.m1 I 0.789
cassava7218.valid.m1 Manihot esculenta cassava7218.valid.m1 I 0.789
Glyma14g30490.1 Glycine max Glyma14g30490.1 I 0.789
PDK_20s1513061g004 Phoenix dactylifera PDK_20s1513061g004 I 0.787
Glyma06g13130.1 Glycine max Glyma06g13130.1 I 0.784
Cucsa.202010 Cucumis sativus Cucsa.202010 I 0.784
30169.m006527 Ricinus communis 30169.m006527 I 0.784
cassava29285.valid.m1 Manihot esculenta cassava29285.valid.m1 I 0.784
Glyma04g41660.1 Glycine max Glyma04g41660.1 I 0.778
ppa005791m Prunus persica ppa005791m I 0.778
GSVIVG00028703001 Vitis vinifera GSVIVG00028703001 I 0.773
Glyma13g08170.1 Glycine max Glyma13g08170.1 I 0.773
GSVIVG00011438001 Vitis vinifera GSVIVG00011438001 I 0.770
cassava3019.m1 Manihot esculenta cassava3019.m1 I 0.770
Medtr3g124540 Medicago truncatula Medtr3g124540 I 0.769
e_gw1.30.357.1 Selaginella moellendorfii e_gw1.30.357.1 I 0.768
Glyma18g49580.1 Glycine max Glyma18g49580.1 I 0.763
XM_002865910.1 Arabidopsis lyrata fgenesh2_kg.8__1206__AT5G53180.1 I 0.762
LOC_Os08g33830 Oryza sativa LOC_Os08g33830 I 0.762
gw1.326.8.1 Physcomitrella patens gw1.326.8.1 I 0.761
e_gw1.81.40.1 Physcomitrella patens e_gw1.81.40.1 D 0.761
A9PHS8_POPTR Populus trichocarpa POPTR_0004s12210 I 0.759
ATPTB2 Arabidopsis thaliana AT5G53180-TAIR-G I 0.757
SB07G021250 Sorghum bicolor Sb07g021250 I 0.757
GRMZM2G178169 Zea mays GRMZM2G178169 I 0.757
Glyma09g37080.1 Glycine max Glyma09g37080.1 I 0.754
28649.m000223 Ricinus communis 28649.m000223 I 0.753
ppa004961m Prunus persica ppa004961m I 0.749
chr1.CM0141.270.nc Lotus japonicus chr1.CM0141.270.nc I 0.747
MDP0000269393 Malus x domestica MDP0000269393 I 0.746
XM_002884247.1 Arabidopsis lyrata scaffold_300118.1 I 0.745
PK14390.1 Cannabis sativa PK14390.1 I 0.743
LOC_Os03g25980 Oryza sativa LOC_Os03g25980 I 0.743
PTB Arabidopsis thaliana AT3G01150-TAIR-G I 0.741
B9IK00_POPTR Populus trichocarpa POPTR_0017s12160 I 0.738
mgf005649m Mimulus guttatus mgf005649m I 0.738
BRADI3G36770 Brachypodium distachyon BRADI3G36770 I 0.733
BRADI1G61200 Brachypodium distachyon BRADI1G61200 I 0.733
SB01G034060 Sorghum bicolor Sb01g034060 I 0.729
MDP0000796160 Malus x domestica MDP0000796160 I 0.727
mgf001230m Mimulus guttatus mgf001230m I 0.723
Medtr7g010320 Medicago truncatula Medtr7g010320 N 0.717
BGIOSIBCE011312 Oryza indica BGIOSIBCE011312 I 0.702