CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Sjc_0034270
(
Schistosoma japonicum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Sjc_0034270
T54798_0.6
SDSPB (2008-Sep-5)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CPRT0000003234
RRM
95
164
VFVWQLSARIRQRDLEDFFTSVGKIRDVRLIMDNKTKRSKGIAYVEFREVESAQLALGLTGTRLLGVPIQ
CPRT0000003234
RRM
194
264
LYIGSLHYNITEEMLKGIFEPFGKIEDIKLIKDPATNRSQGYGFVTYVNSDDAKKALDQLNGFELAGRPMK
CPRT0000003234
RRM
370
425
RDDVIEECTKAGGCLHIFVDRTSAQGNVYVKCPSIAVATQCVNMLHGRYFSGRLIT
Links
Other
RRM
family RBPs
Other
Schistosoma japonicum
RBPs
12 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Smp_064590
Schistosoma mansoni
Smp_064590
N
0.995
estExt_Genewise1.C_sca_90322
Lottia gigantea
estExt_Genewise1.C_sca_90322
N
0.730
amel4_ncbi_hmm11379
Apis mellifera
amel4_ncbi_hmm11379
N
0.726
GH13506
Drosophila grimshawi
FBgn0120982
N
0.715
CPIJ019416
Culex quinquefasciatus
CPIJ019416
N
0.714
CpipJ_CPIJ019416
Culex pipiens
CpipJ_CPIJ019416
N
0.714
CPIJ014704
Culex quinquefasciatus
CPIJ014704
N
0.714
CpipJ_CPIJ014704
Culex pipiens
CpipJ_CPIJ014704
N
0.714
PHUM394230
Pediculus humanus
PHUM394230
N
0.711
GA10876-RA
Drosophila pseudoobscura
FBgn0070932
N
0.704
AAEL005046
Aedes aegypti
AAEL005046
N
0.701
AGAP008433
Anopheles gambiae
AGAP008433
N
0.701