CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AGAP008433
(
Anopheles gambiae
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
AGAP008433
T32532_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AGAP008433-PA
RRM
173
242
VFCMQLSQRIHARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFKDPESVALALGLSGQKLLGIPIS
AGAP008433-PA
RRM
271
341
LYVGSLHFNITEDMLNGIFEPFGKIDNIQLIMDADTGRSKGYGFITFHNADDAKKALEQLNGFELAGRPMK
AGAP008433-PA
RRM
442
497
QDDVIEECNKHGGVQHVYVDKQSPSGNVYVKCPSIATAVLAVNALHGRWFAGRVIG
Links
Other
RRM
family RBPs
Other
Anopheles gambiae
RBPs
59 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CPIJ014704
Culex quinquefasciatus
CPIJ014704
N
0.945
CpipJ_CPIJ014704
Culex pipiens
CpipJ_CPIJ014704
N
0.945
CPIJ019416
Culex quinquefasciatus
CPIJ019416
N
0.945
CpipJ_CPIJ019416
Culex pipiens
CpipJ_CPIJ019416
N
0.945
AAEL005046
Aedes aegypti
AAEL005046
N
0.925
amel4_ncbi_hmm11379
Apis mellifera
amel4_ncbi_hmm11379
N
0.893
PHUM394230
Pediculus humanus
PHUM394230
N
0.873
GI10246
Drosophila mojavensis
FBgn0133011
N
0.859
GE14328
Drosophila yakuba
FBgn0231943
N
0.859
GG10454
Drosophila erecta
FBgn0102763
N
0.859
GH13506
Drosophila grimshawi
FBgn0120982
N
0.855
CG11266
Drosophila melanogaster
FBgn0031883
N
0.854
GF14957
Drosophila ananassae
FBgn0091982
N
0.854
GM16278
Drosophila sechellia
FBgn0171194
N
0.854
GD23448
Drosophila simulans
FBgn0194830
N
0.854
GK15272
Drosophila willistoni
FBgn0217277
N
0.849
GJ18017
Drosophila virilis
FBgn0205182
N
0.846
GA10876-RA
Drosophila pseudoobscura
FBgn0070932
N
0.844
DGIL_AUG5s7518g10t1
Acyrtosiphon pisum
DGIL_AUG5s7518g10t1
N
0.800
estExt_Genewise1Plus.C_150014
Daphnia pulex
estExt_Genewise1Plus.C_150014
N
0.792
rbm39a
Danio rerio
ENSDARG00000011613
N
0.758
estExt_Genewise1.C_sca_90322
Lottia gigantea
estExt_Genewise1.C_sca_90322
N
0.755
RBM39
Taeniopygia guttata
ENSTGUG00000003048
N
0.749
RBM39
Gallus gallus
ENSGALG00000001550
N
0.749
RBM39
Anolis carolinensis
ENSACAG00000006436
N
0.749
RBM23
Tetraodon nigroviridis
ENSTNIG00000017904
N
0.747
RBM23
Oryzias latipes
ENSORLG00000009919
N
0.747
RBM23
Takifugu rubripes
ENSTRUG00000011352
N
0.747
ENSPPYG00000010963
Pongo pygmaeus
ENSPPYG00000010963
N
0.745
RBM39
Homo sapiens
ENSG00000131051
N
0.745
RBM39
Loxodonta africana
ENSLAFG00000010346
N
0.745
RBM39
Equus caballus
ENSECAG00000013423
N
0.745
Q2HJD8_BOVIN
Bos taurus
ENSBTAG00000003949
N
0.745
RBM39
Canis familiaris
ENSCAFG00000008327
N
0.745
B0KWM7_CALJA
Callithrix jacchus
ENSCJAG00000017535
N
0.745
Ame_R004270
Ailuropoda melanoleuca
Ame_R004270
N
0.745
Rbm39
Mus musculus
ENSMUSG00000027620
N
0.745
RBM39
Microcebus murinus
ENSMICG00000001668
N
0.745
RBM39
Tursiops truncatus
ENSTTRG00000017039
N
0.745
RBM39
Sus scrofa
ENSSSCG00000007309
N
0.745
B7NZJ5_RABIT
Oryctolagus cuniculus
ENSOCUG00000007050
N
0.745
RBM39
Sorex araneus
ENSSARG00000007673
N
0.745
rbm39
Xenopus tropicalis
ENSXETG00000007434
N
0.745
RBM39
Pan troglodytes
ENSPTRG00000013449
N
0.745
RBM39
Pteropus vampyrus
ENSPVAG00000014944
N
0.745
Rbm39
Rattus norvegicus
ENSRNOG00000019848
N
0.745
RBM39
Tarsius syrichta
ENSTSYG00000005605
N
0.745
RBM23
Oryzias latipes
ENSORLG00000010370
N
0.744
RBM39
Meleagris gallopavo
ENSMGAG00000001509
N
0.744
RBM39
Monodelphis domestica
ENSMODG00000001557
N
0.741
AAH77813
Xenopus laevis
AAH77813
N
0.740
RBM39
Gorilla gorilla
ENSGGOG00000003950
N
0.735
RBM23
Gasterosteus aculeatus
ENSGACG00000003376
N
0.722
rbm39b
Danio rerio
ENSDARG00000041853
N
0.722
AAH75146
Xenopus laevis
AAH75146
N
0.720
RBM23
Gasterosteus aculeatus
ENSGACG00000002797
N
0.710
RBM39
Otolemur garnettii
ENSOGAG00000011227
N
0.710
Sjc_0034270
Schistosoma japonicum
Sjc_0034270
N
0.701
Smp_064590
Schistosoma mansoni
Smp_064590
N
0.701