CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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BGIBMGA009409
(
Bombyx mori
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
BGIBMGA009409
T55023_0.6
SilkDB (2008-Apr-11)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
BGIBMGA009409
RRM
83
153
LYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSVRMVMERLSKKEIHGQH
Links
Other
RRM
family RBPs
Other
Bombyx mori
RBPs
15 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAEL017164
Aedes aegypti
AAEL017164
N
0.778
CPIJ004892
Culex quinquefasciatus
CPIJ004892
N
0.764
CpipJ_CPIJ004892
Culex pipiens
CpipJ_CPIJ004892
N
0.764
AGAP005062
Anopheles gambiae
AGAP005062
N
0.764
nasonia_NCBI_hmm540594
Nasonia vitripennis
nasonia_NCBI_hmm540594
N
0.764
GK16997
Drosophila willistoni
FBgn0218996
N
0.750
amel4_ncbi_hmm23479
Apis mellifera
amel4_ncbi_hmm23479
N
0.750
GE21315
Drosophila yakuba
FBgn0238580
N
0.736
GD13000
Drosophila simulans
FBgn0184723
N
0.736
CG7185
Drosophila melanogaster
FBgn0035872
N
0.736
GG15090
Drosophila erecta
FBgn0107344
N
0.736
PHUM544500
Pediculus humanus
PHUM544500
N
0.732
GF23561
Drosophila ananassae
FBgn0100555
N
0.722
GM24949
Drosophila sechellia
FBgn0179810
N
0.722
GA20165-RA
Drosophila pseudoobscura
FBgn0080160
N
0.708