CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GD13000
(
Drosophila simulans
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0184723
T43928_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0211402
RRM
95
166
LYVGNLTWWTTDQDIANSLRDIGVSDLQEVKFFENRANGQSKGFSVISLGSESSLRAVLDQLPKKEMHGQAP
Links
Other
RRM
family RBPs
Other
Drosophila simulans
RBPs
19 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GE21315
Drosophila yakuba
FBgn0238580
N
1.000
GG15090
Drosophila erecta
FBgn0107344
N
1.000
CG7185
Drosophila melanogaster
FBgn0035872
N
1.000
GM24949
Drosophila sechellia
FBgn0179810
N
0.986
GA20165-RA
Drosophila pseudoobscura
FBgn0080160
N
0.944
GF23561
Drosophila ananassae
FBgn0100555
N
0.944
GK16997
Drosophila willistoni
FBgn0218996
N
0.917
GJ13124
Drosophila virilis
FBgn0200351
N
0.877
GH15377
Drosophila grimshawi
FBgn0122849
N
0.877
GI12981
Drosophila mojavensis
FBgn0135738
N
0.877
AGAP005062
Anopheles gambiae
AGAP005062
N
0.764
DGIL_AUG5s15867g5t1
Acyrtosiphon pisum
DGIL_AUG5s15867g5t1
N
0.750
AAEL017164
Aedes aegypti
AAEL017164
N
0.736
BGIBMGA009409
Bombyx mori
BGIBMGA009409
N
0.736
PHUM544500
Pediculus humanus
PHUM544500
N
0.736
CpipJ_CPIJ004892
Culex pipiens
CpipJ_CPIJ004892
N
0.736
amel4_ncbi_hmm23479
Apis mellifera
amel4_ncbi_hmm23479
N
0.736
CPIJ004892
Culex quinquefasciatus
CPIJ004892
N
0.736
nasonia_NCBI_hmm540594
Nasonia vitripennis
nasonia_NCBI_hmm540594
N
0.722