CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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BGIBMGA012007
(
Bombyx mori
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
BGIBMGA012007
T55041_0.6
SilkDB (2008-Apr-11)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
BGIBMGA012007
RRM
548
615
LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGFGFIKFAEYEAQLRALGRRHMIDGRWC
BGIBMGA012007
RRM
633
686
VFVGRCTENITAEDLREYFGSFGQVTDVFVPRPFRAFSFVTFLDPEVARSLCGQ
Links
Other
RRM
family RBPs
Other
Bombyx mori
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_Genewise1Plus.C_8190002
Capitella teleta
estExt_Genewise1Plus.C_8190002
I
0.721
nasonia_NCBI_hmm274594
Nasonia vitripennis
nasonia_NCBI_hmm274594
I
0.718
BGIBMGA007518
Bombyx mori
BGIBMGA007518
N
0.713
BGIBMGA006832
Bombyx mori
BGIBMGA006832
N
0.712
amel4_ncbi_hmm11035
Apis mellifera
amel4_ncbi_hmm11035
I
0.710
PHUM575260
Pediculus humanus
PHUM575260
I
0.706
GK15864
Drosophila willistoni
FBgn0217867
I
0.702