PHUM575260 (Pediculus humanus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PHUM575260 T45391_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
TARDBP
M074_0.6 		Homo sapiens GAAUGD RNAcompete
Ray et al.(2013)
RNCMPT00076 		0.717
CG7804
M137_0.6 		Drosophila melanogaster WGKRUGR RNAcompete
Ray et al.(2013)
RNCMPT00146 		0.706
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
PHUM575260-PA RRM 108 175
PHUM575260-PA RRM 194 251

Links

Other RRM family RBPs
Other Pediculus humanus RBPs

58 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
nasonia_NCBI_hmm274594 Nasonia vitripennis nasonia_NCBI_hmm274594 I 0.836
amel4_ncbi_hmm11035 Apis mellifera amel4_ncbi_hmm11035 I 0.828
TBPH Drosophila melanogaster FBgn0025790 I 0.820
GD25005 Drosophila simulans FBgn0196318 I 0.820
GM15502 Drosophila sechellia FBgn0170420 I 0.820
GG19989 Drosophila erecta FBgn0112189 I 0.812
GE11522 Drosophila yakuba FBgn0229324 I 0.812
fgenesh1_pg.C_scaffold_6000249 Daphnia pulex fgenesh1_pg.C_scaffold_6000249 N 0.808
GH20198 Drosophila grimshawi FBgn0127662 I 0.805
GI20724 Drosophila mojavensis FBgn0143459 I 0.805
GJ21868 Drosophila virilis FBgn0208985 I 0.805
GK15864 Drosophila willistoni FBgn0217867 I 0.805
GL10927 Drosophila persimilis FBgn0148537 I 0.797
GA10247-RA Drosophila pseudoobscura FBgn0070305 I 0.797
GF12452 Drosophila ananassae FBgn0089489 I 0.797
e_gw.96.287.1 Branchiostoma floridae e_gw.96.287.1 I 0.786
BGIBMGA006832 Bombyx mori BGIBMGA006832 N 0.780
estExt_Genewise1Plus.C_8190002 Capitella teleta estExt_Genewise1Plus.C_8190002 I 0.730
BGIBMGA007518 Bombyx mori BGIBMGA007518 N 0.722
e_gw.96.41.1 Branchiostoma floridae e_gw.96.41.1 N 0.721
estExt_fgenesh2_pg.C_sca_880075 Lottia gigantea estExt_fgenesh2_pg.C_sca_880075 N 0.721
170286 Helobdella robusta 170286 I 0.714
LOC100014246 Monodelphis domestica ENSMODG00000011233 I 0.711
TARDBP Tupaia belangeri ENSTBEG00000000263 I 0.711
TARDBP Ornithorhynchus anatinus ENSOANG00000013320 I 0.711
TARDBP Tursiops truncatus ENSTTRG00000001312 I 0.711
TARDBP Vicugna pacos ENSVPAG00000009543 I 0.711
LOC100051482 Equus caballus ENSECAG00000008338 I 0.711
ENSCAFG00000016759 Canis familiaris ENSCAFG00000016759 I 0.711
ENSACAG00000011709 Anolis carolinensis ENSACAG00000011709 I 0.711
Ame_R011012 Ailuropoda melanoleuca Ame_R011012 I 0.711
TARDBP Macropus eugenii ENSMEUG00000006548 I 0.711
TARDBP Cavia porcellus ENSCPOG00000011619 I 0.711
TARDBP Loxodonta africana ENSLAFG00000014421 I 0.711
TARDBP Taeniopygia guttata ENSTGUG00000003255 I 0.711
TARDBP Echinops telfairi ENSETEG00000004358 I 0.711
TARDBP Erinaceus europaeus ENSEEUG00000003755 I 0.711
TARDBP Takifugu rubripes ENSTRUG00000012070 I 0.709
BGIBMGA012007 Bombyx mori BGIBMGA012007 N 0.706
tardbp Xenopus tropicalis ENSXETG00000006317 I 0.703
ENSMMUG00000007456 Macaca mulatta ENSMMUG00000007456 I 0.703
TARDBP Felis catus ENSFCAG00000000050 I 0.703
TARDBP Homo sapiens ENSG00000120948 D 0.703
TADBP_CHICK Gallus gallus ENSGALG00000002906 I 0.703
Tardbp Dipodomys ordii ENSDORG00000007465 I 0.703
TARDBP Dasypus novemcinctus ENSDNOG00000008531 I 0.703
Q2KJ45_BOVIN Bos taurus ENSBTAG00000003697 I 0.703
tardbpl Danio rerio ENSDARG00000004452 I 0.703
TARDBP Meleagris gallopavo ENSMGAG00000004637 I 0.703
Tardbp Mus musculus ENSMUSG00000041459 I 0.703
ENSPPYG00000001894 Pongo pygmaeus ENSPPYG00000001894 I 0.703
XR_021519.1 Pan troglodytes ENSPTRG00000000136 I 0.703
Tardbp Rattus norvegicus ENSRNOG00000012455 I 0.703
TARDBP Procavia capensis ENSPCAG00000010442 I 0.703
TARDBP Oryzias latipes ENSORLG00000003593 I 0.703
ENSOCUG00000004049 Oryctolagus cuniculus ENSOCUG00000004049 I 0.703
TARDBP Ochotona princeps ENSOPRG00000006352 I 0.703
TARDBP Tetraodon nigroviridis ENSTNIG00000015173 I 0.701