CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CAGL0I05082g
(
Candida glabrata
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CAGL0I05082g
T55699_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CAGL0I05082g
RRM
68
138
IVIKNIPFALKREQLLDFMTSLDLPLPYAFNYHFDNGTFRGLAFANYNSEVDTAKVVNELNEKEVGGRNLR
Links
Other
RRM
family RBPs
Other
Candida glabrata
RBPs
13 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LELG_00183
Lodderomyces elongisporus
LELG_00183
N
0.746
PIN4
Candida albicans
orf19.2534
N
0.746
PGUG_01669
Candida guilliermondii
PGUG_01669
N
0.746
estExt_fgenesh1_pg.C_chr_8.10303
Pichia stipitis
estExt_fgenesh1_pg.C_chr_8.10303
N
0.746
Cd36_26480
Candida dubliniensis
Cd36_26480
N
0.746
CTRG_00938
Candida tropicalis
CTRG_00938
N
0.746
CPAG_02687
Candida parapsilosis
CPAG_02687
N
0.746
CLUG_00283
Candida lusitaniae
CLUG_00283
N
0.746
Scas_Contig500.6
Saccharomyces castellii
Scas_Contig500.6
N
0.718
XP_002491986.1
Pichia pastoris
XP_002491986.1
N
0.718
YALI0D15752g
Yarrowia lipolytica
YALI0D15752g
N
0.718
DEHA0A07766g
Debaryomyces hansenii
DEHA0A07766g
N
0.718
SAKL0F11924g
Lachancea kluyveri
SAKL0F11924g
N
0.704