CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Cd36_18760
(
Candida dubliniensis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Cd36_18760
T55738_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cd36_18760
RRM
158
209
VFVGNVPADVITSKIIAKNFKNLFKHYGKIDSIRYRSISFDENLPRKVAFAK
Cd36_18760
RRM
207
248
FAKKNLHKSRDSVNAYIVYKEKPASIAAKELNAAVFEDHHLR
Cd36_18760
RRM
264
335
IFVGNLDFEEKEETLWKYFNSKFDEDVESVRIIRDSKTNLGKGFALVQFKDTLSVNKALLLNDKPLESGALK
Links
Other
RRM
family RBPs
Other
Candida dubliniensis
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
orf19.809
Candida albicans
orf19.809
N
0.929
CTRG_01565
Candida tropicalis
CTRG_01565
N
0.873
CPAG_03144
Candida parapsilosis
CPAG_03144
N
0.759