CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_fgenesh1_pg.C_90506
(
Cryphonectria parasitica
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
estExt_fgenesh1_pg.C_90506
T56232_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh1_pg.C_90506
RRM
123
201
VYVTGLTPTVKEDELLKTLRRPEFFGQYGNIQKISISNRKNQEGQNQSLGIYVTFEKKEDAQRCIQAVNGSQNGDRILK
Links
Other
RRM
family RBPs
Other
Cryphonectria parasitica
RBPs
18 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
NCU12108
Neurospora crassa
NCU12108
N
0.924
estExt_fgenesh1_pg.C_20203
Neurospora tetrasperma
estExt_fgenesh1_pg.C_20203
N
0.924
estExt_fgenesh2_pg.C_60414
Neurospora discreta
estExt_fgenesh2_pg.C_60414
N
0.924
GLRG_09569
Colletotrichum graminicola
GLRG_09569
N
0.899
VDBG_07902
Verticillium albo atrum
VDBG_07902
N
0.886
MGG_11229
Magnaporthe oryzae
MGG_11229
N
0.873
VDAG_05474
Verticillium dahliae
VDAG_05474
N
0.873
e_gw1.5.156.1
Thielavia terrestris
e_gw1.5.156.1
N
0.861
CHGG_09245
Chaetomium globosum
CHGG_09245
N
0.848
estExt_Genewise1.C_52146
Myceliophthora thermophila
estExt_Genewise1.C_52146
N
0.835
fgenesh1_pm.sca_18_chr2_1_0000776
Nectria haematococca
fgenesh1_pm.sca_18_chr2_1_0000776
N
0.835
FGSG_09233
Fusarium graminearum
FGSG_09233
N
0.823
estExt_GeneWisePlus.C_160009
Trichoderma reesei
estExt_GeneWisePlus.C_160009
N
0.823
e_gw1.2.16.1
Trichoderma atroviride
e_gw1.2.16.1
N
0.823
Pa_4_7170
Podospora anserina
Pa_4_7170
N
0.810
FOXG_06007
Fusarium oxysporum
FOXG_06007
N
0.810
e_gw1.2.10.1
Trichoderma virens
e_gw1.2.10.1
N
0.810
FVEG_03874
Fusarium verticillioides
FVEG_03874
N
0.810