CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_fgenesh2_kg.C_100155
(
Agaricus bisporus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
estExt_fgenesh2_kg.C_100155
T56254_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh2_kg.C_100155
RRM
5
75
VFVGNVPYNMGEDQLIDVFKSVGQVIGFRLVFDRETGKPRGYGFCEFADNETALSAVRNLNNVDVGGRPLR
Links
Other
RRM
family RBPs
Other
Agaricus bisporus
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
fgenesh2_pm.C_scaffold_8000201
Heterobasidion annosum
fgenesh2_pm.C_scaffold_8000201
N
0.901
fgenesh1_pm.C_scaffold_1000789
Pleurotus ostreatus
fgenesh1_pm.C_scaffold_1000789
N
0.887
estExt_Genewise1_worm.C_70120
Laccaria bicolor
estExt_Genewise1_worm.C_70120
N
0.887
estExt_Genewise1.C_230050
Postia placenta
estExt_Genewise1.C_230050
N
0.845
estExt_fgenesh2_pg.C_60367
Schizophyllum commune
estExt_fgenesh2_pg.C_60367
N
0.831
UM02881
Ustilago maydis
UM02881
N
0.761
SPPG_01899
Spizellomyces punctatus
SPPG_01899
N
0.746