CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GSTUMT00002679001
(
Tuber melanosporum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
GSTUMT00002679001
T56921_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GSTUMT00002679001
RRM
97
165
LYVADLHWWTTDDDIRGWVNECGCEDELKDITFSEHKVNGKSKGVAFVEFTSPQAATAVKNKIEVGGSQ
Links
Other
RRM
family RBPs
Other
Tuber melanosporum
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CPSG_05134
Coccidioides posadasii
CPSG_05134
N
0.754
HCAG_07243
Histoplasma capsulatum
HCAG_07243
N
0.746
PABG_00859
Paracoccidioides brasiliensis
PABG_00859
N
0.743
UREG_00439
Uncinocarpus reesii
UREG_00439
N
0.740
CIMG_00383
Coccidioides immitis
CIMG_00383
N
0.739
fgenesh3_pm.C_scaffold_2000208
Neurospora discreta
fgenesh3_pm.C_scaffold_2000208
N
0.725
ACLA_034850
Aspergillus clavatus
CADACLAG00004062
N
0.718
estExt_fgenesh1_pg.C_70148
Neurospora tetrasperma
estExt_fgenesh1_pg.C_70148
N
0.710
NCU02152
Neurospora crassa
NCU02152
N
0.710
AFUA_3G06890
Aspergillus fumigatus
CADAFUAG00005682
N
0.704
NFIA_070360
Neosartorya fischeri
CADNFIAG00005684
N
0.704