CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ZYRO0G04862g
(
Zygosaccharomyces rouxii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ZYRO0G04862g
T59402_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ZYRO0G04862g
RRM
104
124
VWIGNLSFDTSKEDITRFLVA
ZYRO0G04862g
RRM
138
188
NAILRIHMPFAQNDGKKIKNKGFCYVDFKTIEQMESAVKLSESQLNGRNLL
ZYRO0G04862g
RRM
216
286
LFVGNLSFDTSDDLLRKHFQHCGDIIKVRMATFQDSGKCKGFAFVDFKEEQGATNALKDKSCRKIAGRSIR
Links
Other
RRM
family RBPs
Other
Zygosaccharomyces rouxii
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
A7TL72_VANPO
Vanderwaltozyma polyspora
A7TL72_VANPO
N
0.767
SAKL0E12738g
Lachancea kluyveri
SAKL0E12738g
N
0.755
CAGL0J11154g
Candida glabrata
CAGL0J11154g
N
0.733
Kwal_14463
Kluyveromyces waltii
Kwal_14463
N
0.714
KLTH0B06886g
Kluyveromyces thermotolerans
KLTH0B06886g
N
0.708
20286_YNL175C
Saccharomyces bayanus
20286_YNL175C
N
0.701