CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AAH70824
(
Xenopus laevis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
AAH70824
T59508_0.6
Xenbase (2010-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AAH70824
RRM
119
181
SSLSDEAIEDGLFHEFKKFGDVSVKMSREGDERVALVNFRRALDARAAKHARGRLVLYDRPLK
AAH70824
RRM
301
370
LFVGNLDVIVKETEIYRVFGRFGTITEVDIKRAGRGQQTTYGFIKFENLDMAHRAKVAMSGKMLRSYALK
AAH70824
RRM
382
444
LWVGGLGPWVPVTALAREFDRFGTIRQIDYRKGENWAYIQYESLDAAQAACTQMRGFPLGGDH
Links
Other
RRM
family RBPs
Other
Xenopus laevis
RBPs
37 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
rbm15
Xenopus tropicalis
ENSXETG00000002029
N
0.974
rbm15
Danio rerio
ENSDARG00000073847
N
0.784
RBM15
Gallus gallus
ENSGALG00000000401
N
0.782
ENSMGAG00000013763
Meleagris gallopavo
ENSMGAG00000013763
N
0.782
RBM15
Gasterosteus aculeatus
ENSGACG00000001022
N
0.771
RBM15
Oryzias latipes
ENSORLG00000000433
N
0.768
ENSACAG00000012741
Anolis carolinensis
ENSACAG00000012741
N
0.767
RBM15
Tetraodon nigroviridis
ENSTNIG00000015129
N
0.766
RBM15
Macropus eugenii
ENSMEUG00000015940
N
0.765
RBM15
Monodelphis domestica
ENSMODG00000001706
N
0.765
Rbm15
Dipodomys ordii
ENSDORG00000005669
N
0.761
RBM15
Pteropus vampyrus
ENSPVAG00000007193
N
0.761
RBM15
Pan troglodytes
ENSPTRG00000001074
N
0.756
ENSPPYG00000001051
Pongo pygmaeus
ENSPPYG00000001051
N
0.756
RBM15
Homo sapiens
ENSG00000162775
N
0.756
RBM15
Sus scrofa
ENSSSCG00000006809
N
0.756
RBM15
Bos taurus
ENSBTAG00000012555
N
0.756
RBM15
Tursiops truncatus
ENSTTRG00000001317
N
0.756
RBM15
Canis familiaris
ENSCAFG00000019789
N
0.756
RBM15
Tupaia belangeri
ENSTBEG00000008339
N
0.756
Ame_R016998
Ailuropoda melanoleuca
Ame_R016998
N
0.756
RBM15
Callithrix jacchus
ENSCJAG00000003411
N
0.756
RBM15
Macaca mulatta
ENSMMUG00000015020
N
0.756
RBM15
Loxodonta africana
ENSLAFG00000012897
N
0.756
RBM15
Gorilla gorilla
ENSGGOG00000003655
N
0.756
RBM15
Dasypus novemcinctus
ENSDNOG00000016207
N
0.756
LOC100058541
Equus caballus
ENSECAG00000023660
N
0.756
Rbm15
Mus musculus
ENSMUSG00000048109
N
0.756
RBM15
Oryctolagus cuniculus
ENSOCUG00000002434
N
0.756
RBM15
Takifugu rubripes
ENSTRUG00000002921
N
0.755
RBM15
Gasterosteus aculeatus
ENSGACG00000007932
N
0.754
RBM15
Felis catus
ENSFCAG00000007674
N
0.751
RBM15
Tarsius syrichta
ENSTSYG00000000106
N
0.751
RBM15
Procavia capensis
ENSPCAG00000006329
N
0.741
RBM15
Takifugu rubripes
ENSTRUG00000007851
N
0.736
RBM15
Otolemur garnettii
ENSOGAG00000009182
N
0.736
RBM15
Oryzias latipes
ENSORLG00000006197
N
0.730