CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
nasonia_NCBI_hmm600493
(
Nasonia vitripennis
)
S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00575 (S1)
IPR003029
nasonia_NCBI_hmm600493
T60114_0.6
DroSpeGe (2008-Jul-18)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
nasonia_NCBI_hmm600493
S1
272
347
ELEVGKIYTGKVANVVPFGCFVQLDGLRKRSEGLVHISQLRREGRVVNASDVVTRGEKVFVKVLNITGQKVSLSMK
Links
Other
S1
family RBPs
Other
Nasonia vitripennis
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
amel4_ncbi_hmm2843
Apis mellifera
amel4_ncbi_hmm2843
N
0.816
GE13554
Drosophila yakuba
FBgn0231217
N
0.750
GG20423
Drosophila erecta
FBgn0112613
N
0.750
pea
Drosophila melanogaster
FBgn0086895
N
0.737
GM21509
Drosophila sechellia
FBgn0176389
N
0.737
GJ21042
Drosophila virilis
FBgn0208176
N
0.724
GL11247
Drosophila persimilis
FBgn0148856
N
0.724
GF12026
Drosophila ananassae
FBgn0089065
N
0.724
GA20923-RA
Drosophila pseudoobscura
FBgn0080912
N
0.724
PHUM299460
Pediculus humanus
PHUM299460
N
0.713
GI21186
Drosophila mojavensis
FBgn0143917
N
0.711