CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
GJ21042
(
Drosophila virilis
)
S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00575 (S1)
IPR003029
FBgn0208176
T60654_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0235459
S1
304
379
DPELGKIYSGKVANIVPFGCFVQLFGLRKRWEGLVHISQLRAEGRVTDVTEVVARNQTVKVKVMSLTGQKVSLSMK
Links
Other
S1
family RBPs
Other
Drosophila virilis
RBPs
14 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GL11247
Drosophila persimilis
FBgn0148856
N
0.974
GA20923-RA
Drosophila pseudoobscura
FBgn0080912
N
0.974
GE13554
Drosophila yakuba
FBgn0231217
N
0.961
GH22675
Drosophila grimshawi
FBgn0130133
N
0.961
GI21186
Drosophila mojavensis
FBgn0143917
N
0.961
GM21509
Drosophila sechellia
FBgn0176389
N
0.947
GG20423
Drosophila erecta
FBgn0112613
N
0.947
pea
Drosophila melanogaster
FBgn0086895
N
0.947
GF12026
Drosophila ananassae
FBgn0089065
N
0.934
amel4_ncbi_hmm2843
Apis mellifera
amel4_ncbi_hmm2843
N
0.763
PHUM299460
Pediculus humanus
PHUM299460
N
0.750
ISCW002555
Ixodes scapularis
ISCW002555
N
0.737
BGIBMGA002895
Bombyx mori
BGIBMGA002895
N
0.724
nasonia_NCBI_hmm600493
Nasonia vitripennis
nasonia_NCBI_hmm600493
N
0.724