CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PHUM299460
(
Pediculus humanus
)
S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00575 (S1)
IPR003029
PHUM299460
T60734_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PHUM299460-PA
S1
277
356
DPEVGKIYNGKIANIVPFGCFVQLENLRKRWEGLVHISQLRREGRITTVADVVSRGQKVKVKVLSVTGQKVSLSIKDVDQ
Links
Other
S1
family RBPs
Other
Pediculus humanus
RBPs
44 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GM21509
Drosophila sechellia
FBgn0176389
N
0.762
pea
Drosophila melanogaster
FBgn0086895
N
0.762
amel4_ncbi_hmm2843
Apis mellifera
amel4_ncbi_hmm2843
N
0.762
GJ21042
Drosophila virilis
FBgn0208176
N
0.750
GF12026
Drosophila ananassae
FBgn0089065
N
0.750
GE13554
Drosophila yakuba
FBgn0231217
N
0.750
ISCW002555
Ixodes scapularis
ISCW002555
N
0.750
GG20423
Drosophila erecta
FBgn0112613
N
0.738
GA20923-RA
Drosophila pseudoobscura
FBgn0080912
N
0.738
GI21186
Drosophila mojavensis
FBgn0143917
N
0.738
GL11247
Drosophila persimilis
FBgn0148856
N
0.738
GH22675
Drosophila grimshawi
FBgn0130133
N
0.725
ENSGACG00000003736
Gasterosteus aculeatus
ENSGACG00000003736
N
0.713
nasonia_NCBI_hmm600493
Nasonia vitripennis
nasonia_NCBI_hmm600493
N
0.713
DHX8
Oryzias latipes
ENSORLG00000011951
N
0.713
DHX8
Pteropus vampyrus
ENSPVAG00000014872
N
0.700
ENSPPYG00000008357
Pongo pygmaeus
ENSPPYG00000008357
N
0.700
Dhx8
Rattus norvegicus
ENSRNOG00000020772
N
0.700
DHX8
Pan troglodytes
ENSPTRG00000009246
N
0.700
DHX8
Taeniopygia guttata
ENSTGUG00000002881
N
0.700
DHX8
Vicugna pacos
ENSVPAG00000004605
N
0.700
DHX8
Tarsius syrichta
ENSTSYG00000008782
N
0.700
DHX8
Sus scrofa
ENSSSCG00000017378
N
0.700
Dhx8
Mus musculus
ENSMUSG00000034931
N
0.700
DHX8
Danio rerio
ENSDARG00000054707
N
0.700
Dhx8
Dipodomys ordii
ENSDORG00000013845
N
0.700
LOC100051804
Equus caballus
ENSECAG00000019601
N
0.700
DHX8
Felis catus
ENSFCAG00000009908
N
0.700
DHX8
Cavia porcellus
ENSCPOG00000000224
N
0.700
LOC100394123
Callithrix jacchus
ENSCJAG00000010659
N
0.700
DHX8
Anolis carolinensis
ENSACAG00000013509
N
0.700
DHX8
Bos taurus
ENSBTAG00000008339
N
0.700
DHX8
Canis familiaris
ENSCAFG00000014556
N
0.700
DHX8
Homo sapiens
ENSG00000067596
N
0.700
DHX8
Gasterosteus aculeatus
ENSGACG00000003750
N
0.700
DHX8
Monodelphis domestica
ENSMODG00000015181
N
0.700
Ame_R007841
Ailuropoda melanoleuca
Ame_R007841
N
0.700
DHX8
Oryctolagus cuniculus
ENSOCUG00000008014
N
0.700
DHX8
Macaca mulatta
ENSMMUG00000012071
N
0.700
DHX8
Myotis lucifugus
ENSMLUG00000000090
N
0.700
LOC771596
Gallus gallus
ENSGALG00000001186
N
0.700
LOC425433
Gallus gallus
ENSGALG00000008448
N
0.700
DHX8
Loxodonta africana
ENSLAFG00000022159
N
0.700
DHX8
Ochotona princeps
ENSOPRG00000014865
N
0.700