B9I516_POPTR (Populus trichocarpa)
S1

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00575 (S1) IPR003029 POPTR_0012s01120 T60747_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0012s01120.1 S1 253 322

Links

Other S1 family RBPs
Other Populus trichocarpa RBPs

17 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9N9A7_POPTR Populus trichocarpa POPTR_0015s05960 N 0.877
Cucsa.133580 Cucumis sativus Cucsa.133580 N 0.838
LjSGA_089147.1 Lotus japonicus LjSGA_089147.1 N 0.824
GSVIVG00029863001 Vitis vinifera GSVIVG00029863001 N 0.824
ppa000417m Prunus persica ppa000417m N 0.824
cassava6632.valid.m1 Manihot esculenta cassava6632.valid.m1 N 0.811
PK14265.1 Cannabis sativa PK14265.1 N 0.797
30170.m013734 Ricinus communis 30170.m013734 N 0.795
Medtr1g143710 Medicago truncatula Medtr1g143710 N 0.770
mgf003625m Mimulus guttatus mgf003625m N 0.770
AT3G26560 Arabidopsis thaliana AT3G26560-TAIR-G N 0.716
BGIOSIBCE006610 Oryza indica BGIOSIBCE006610 N 0.707
GRMZM2G029258 Zea mays GRMZM2G029258 N 0.707
SB01G044300 Sorghum bicolor Sb01g044300 N 0.707
LOC_Os02g19860 Oryza sativa LOC_Os02g19860 N 0.707
Glyma14g40560.1 Glycine max Glyma14g40560.1 N 0.700
PDK_20s1514981g002 Phoenix dactylifera PDK_20s1514981g002 N 0.700