CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
Aqu1.228495
(
Amphimedon queenslandica
)
S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00575 (S1)
IPR003029
Aqu1.228495
T60977_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Aqu1.228495
S1
228
303
QPEVSQIYDGKVSSIMQFGCFVQLEGVRGRHEGLVHVSQLRQEGRVREVSDVVKRGQKVKVKVLSITGNKMSLSIK
Links
Other
S1
family RBPs
Other
Amphimedon queenslandica
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSTRUG00000004063
Takifugu rubripes
ENSTRUG00000004063
N
0.724
ISCW002555
Ixodes scapularis
ISCW002555
N
0.711
ENSTNIG00000002771
Tetraodon nigroviridis
ENSTNIG00000002771
N
0.711
ENSGACG00000003736
Gasterosteus aculeatus
ENSGACG00000003736
N
0.711
DHX8
Danio rerio
ENSDARG00000054707
N
0.711