CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSTRUG00000004063
(
Takifugu rubripes
)
S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00575 (S1)
IPR003029
ENSTRUG00000004063
T60568_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTRUP00000009629
S1
251
326
EPVVGDIYNGKVSSIMQFGCFVQLEGLRKRWEGLVHVSELRKEGRVADVADVVTKSQKVLVKVLSVTGTKASLSMK
ENSTRUP00000009630
S1
189
264
EPVVGDIYNGKVSSIMQFGCFVQLEGLRKRWEGLVHVSELRKEGRVADVADVVTKSQKVLVKVLSVTGTKASLSMK
Links
Other
S1
family RBPs
Other
Takifugu rubripes
RBPs
47 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSTNIG00000002771
Tetraodon nigroviridis
ENSTNIG00000002771
N
0.921
ENSGACG00000003736
Gasterosteus aculeatus
ENSGACG00000003736
N
0.895
DHX8
Myotis lucifugus
ENSMLUG00000000090
N
0.842
DHX8
Macaca mulatta
ENSMMUG00000012071
N
0.842
DHX8
Loxodonta africana
ENSLAFG00000022159
N
0.842
Dhx8
Mus musculus
ENSMUSG00000034931
N
0.842
LOC100051804
Equus caballus
ENSECAG00000019601
N
0.842
DHX8
Felis catus
ENSFCAG00000009908
N
0.842
DHX8
Oryctolagus cuniculus
ENSOCUG00000008014
N
0.842
Dhx8
Rattus norvegicus
ENSRNOG00000020772
N
0.842
DHX8
Sus scrofa
ENSSSCG00000017378
N
0.842
DHX8
Pteropus vampyrus
ENSPVAG00000014872
N
0.842
DHX8
Pan troglodytes
ENSPTRG00000009246
N
0.842
DHX8
Ochotona princeps
ENSOPRG00000014865
N
0.842
ENSPPYG00000008357
Pongo pygmaeus
ENSPPYG00000008357
N
0.842
Dhx8
Dipodomys ordii
ENSDORG00000013845
N
0.842
DHX8
Homo sapiens
ENSG00000067596
N
0.842
DHX8
Bos taurus
ENSBTAG00000008339
N
0.842
DHX8
Canis familiaris
ENSCAFG00000014556
N
0.842
LOC100394123
Callithrix jacchus
ENSCJAG00000010659
N
0.842
Ame_R007841
Ailuropoda melanoleuca
Ame_R007841
N
0.842
DHX8
Vicugna pacos
ENSVPAG00000004605
N
0.842
DHX8
Cavia porcellus
ENSCPOG00000000224
N
0.842
DHX8
Tarsius syrichta
ENSTSYG00000008782
N
0.842
DHX8
Anolis carolinensis
ENSACAG00000013509
N
0.829
DHX8
Tursiops truncatus
ENSTTRG00000016056
N
0.829
DHX8
Taeniopygia guttata
ENSTGUG00000002881
N
0.829
DHX8
Monodelphis domestica
ENSMODG00000015181
N
0.829
DHX8
Gorilla gorilla
ENSGGOG00000000143
N
0.829
DHX8
Echinops telfairi
ENSETEG00000010986
N
0.829
DHX8
Danio rerio
ENSDARG00000054707
N
0.829
LOC771596
Gallus gallus
ENSGALG00000001186
N
0.829
DHX8
Gasterosteus aculeatus
ENSGACG00000003750
N
0.829
LOC425433
Gallus gallus
ENSGALG00000008448
N
0.829
ENSMLUG00000014389
Myotis lucifugus
ENSMLUG00000014389
N
0.816
DHX8
Oryzias latipes
ENSORLG00000011951
N
0.816
dhx8
Xenopus tropicalis
ENSXETG00000013672
N
0.816
DHX8
Takifugu rubripes
ENSTRUG00000002454
N
0.816
AAH73477
Xenopus laevis
AAH73477
N
0.803
DHX8
Dasypus novemcinctus
ENSDNOG00000013606
N
0.789
DHX8
Sorex araneus
ENSSARG00000007300
N
0.737
ENSCING00000001546
Ciona intestinalis
ENSCING00000001546
N
0.724
ISCW002555
Ixodes scapularis
ISCW002555
N
0.724
Aqu1.228495
Amphimedon queenslandica
Aqu1.228495
N
0.724
XP_001193417.1
Strongylocentrotus purpuratus
XP_001193417.1
N
0.711
XP_799263.2
Strongylocentrotus purpuratus
XP_799263.2
N
0.711