CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_Genewise1Plus.C_90498
(
Neurospora tetrasperma
)
S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00575 (S1)
IPR003029
estExt_Genewise1Plus.C_90498
T61177_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_Genewise1Plus.C_90498
S1
1090
1161
SLCEGMIVAANVRVVKDDFAIVKLDCGIEGRIESHDVSYRHSIKDVLHVGQVVQAKLIDLNRKEFVSKLSMR
Links
Other
S1
family RBPs
Other
Neurospora tetrasperma
RBPs
9 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_Genewise1Plus.C_11025
Neurospora discreta
estExt_Genewise1Plus.C_11025
N
1.000
NCU04611
Neurospora crassa
NCU04611
N
1.000
genemark.2690_g
Thielavia terrestris
genemark.2690_g
N
0.819
estExt_Genewise1.C_33759
Myceliophthora thermophila
estExt_Genewise1.C_33759
N
0.806
Pa_2_830
Podospora anserina
Pa_2_830
N
0.778
CHGG_00532
Chaetomium globosum
CHGG_00532
N
0.750
FOXG_05520
Fusarium oxysporum
FOXG_05520
N
0.722
FGSG_09904
Fusarium graminearum
FGSG_09904
N
0.722
estExt_Genewise1.C_90896
Trichoderma virens
estExt_Genewise1.C_90896
N
0.708