CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_Genewise1.C_33759
(
Myceliophthora thermophila
)
S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00575 (S1)
IPR003029
estExt_Genewise1.C_33759
T61145_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_Genewise1.C_33759
S1
1100
1170
LCEGMIVPVNVRVVKDDFAIVKLDCGIEGRVEAHEVSYRHSIKDMLQVGQTAQAKIIDINRKDFVCKLSMR
Links
Other
S1
family RBPs
Other
Myceliophthora thermophila
RBPs
14 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
genemark.2690_g
Thielavia terrestris
genemark.2690_g
N
0.944
CHGG_00532
Chaetomium globosum
CHGG_00532
N
0.873
e_gw1.5.1025.1
Nectria haematococca
e_gw1.5.1025.1
N
0.831
Pa_2_830
Podospora anserina
Pa_2_830
N
0.831
FGSG_09904
Fusarium graminearum
FGSG_09904
N
0.831
estExt_Genewise1Plus.C_11025
Neurospora discreta
estExt_Genewise1Plus.C_11025
N
0.806
NCU04611
Neurospora crassa
NCU04611
N
0.806
estExt_Genewise1Plus.C_90498
Neurospora tetrasperma
estExt_Genewise1Plus.C_90498
N
0.806
FOXG_05520
Fusarium oxysporum
FOXG_05520
N
0.803
FVEG_02619
Fusarium verticillioides
FVEG_02619
N
0.775
estExt_Genewise1.C_90896
Trichoderma virens
estExt_Genewise1.C_90896
N
0.761
e_gw1.4.4.1
Trichoderma reesei
e_gw1.4.4.1
N
0.746
e_gw1.1.40.1
Trichoderma atroviride
e_gw1.1.40.1
N
0.746
MGG_11491
Magnaporthe oryzae
MGG_11491
N
0.704