CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_Genewise1Plus.C_70990
(
Cryphonectria parasitica
)
S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00575 (S1)
IPR003029
estExt_Genewise1Plus.C_70990
T61533_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_Genewise1Plus.C_70990
S1
1109
1181
SLAEGMIIPVNVRVVKDDFAIVRLDCGIEGRIEADEVSYRSTSVKDVLSIGQTVQAKLLHVDRKAFIAKLSVR
Links
Other
S1
family RBPs
Other
Cryphonectria parasitica
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Pa_2_830
Podospora anserina
Pa_2_830
N
0.740
estExt_Genewise1.C_90896
Trichoderma virens
estExt_Genewise1.C_90896
N
0.740
e_gw1.4.4.1
Trichoderma reesei
e_gw1.4.4.1
N
0.726
e_gw1.1.40.1
Trichoderma atroviride
e_gw1.1.40.1
N
0.726
FGSG_09904
Fusarium graminearum
FGSG_09904
N
0.712