CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_fgenesh2_pg.C_120175
(
Serpula lacrymans
)
YTH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF04146 (YTH)
IPR007275
estExt_fgenesh2_pg.C_120175
T62493_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh2_pg.C_120175
YTH
611
702
LFFSVNASGHFCGMAEMLTPVDYTRSSTVWASDKWKGVFKVRWIFVRDIPNANLRHIRLNNTQERKPVTNSRDTQELLPEAGQEMLRIFHTH
Links
Other
YTH
family RBPs
Other
Serpula lacrymans
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
e_gw1.2.841.1
Heterobasidion annosum
e_gw1.2.841.1
N
0.989
estExt_fgenesh3_pg.C_830047
Postia placenta
estExt_fgenesh3_pg.C_830047
N
0.989
e_gw1.1.1657.1
Pleurotus ostreatus
e_gw1.1.1657.1
N
0.967
fgenesh3_pg.C_scaffold_2000868
Laccaria bicolor
fgenesh3_pg.C_scaffold_2000868
N
0.967
fgenesh1_pg.C_scaffold_1000538
Phanerochaete chrysosporium
fgenesh1_pg.C_scaffold_1000538
N
0.967
CC1G_01141
Coprinopsis cinerea
CC1G_01141
N
0.946
gw1.2.1711.1
Schizophyllum commune
gw1.2.1711.1
N
0.924
estExt_fgenesh2_pg.C_20147
Agaricus bisporus
estExt_fgenesh2_pg.C_20147
N
0.891
UM02724
Ustilago maydis
UM02724
N
0.731
estExt_fgenesh1_pg.C_60396
Sporobolomyces roseus
estExt_fgenesh1_pg.C_60396
N
0.717
e_gw1.37.103.1
Melampsora laricis populina
e_gw1.37.103.1
N
0.707