B9HNZ4_POPTR (Populus trichocarpa)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		POPTR_0009s05520 T00755_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0009s05520.1 CCCH ZF 269 291
POPTR_0009s05520.1 RRM 406 466

Links

Other CCCH ZF,RRM family RBPs
Other Populus trichocarpa RBPs

79 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29223.m000023 Ricinus communis 29223.m000023 N 0.718
AT2G05160 Arabidopsis thaliana AT2G05160-TAIR-G N 0.000
cassava31399.valid.m1 Manihot esculenta cassava31399.valid.m1 N 0.000
cassava31400.valid.m1 Manihot esculenta cassava31400.valid.m1 N 0.000
cassava36931.valid.m1 Manihot esculenta cassava36931.valid.m1 N 0.736
cassava7063.valid.m1 Manihot esculenta cassava7063.valid.m1 N 0.000
XM_002876131.1 Arabidopsis lyrata fgenesh2_kg.5__1664__AT3G52980.1 N 0.000
Glyma14g01930.1 Glycine max Glyma14g01930.1 N 0.000
GSVIVG00037782001 Vitis vinifera GSVIVG00037782001 N 0.000
MDP0000214614 Malus x domestica MDP0000214614 N 0.706
MDP0000906147 Malus x domestica MDP0000906147 N 0.000
Medtr5g102170 Medicago truncatula Medtr5g102170 N 0.000
mgf003557m Mimulus guttatus mgf003557m N 0.000
PK01281.1 Cannabis sativa PK01281.1 N 0.000
PK20504.1 Cannabis sativa PK20504.1 N 0.706
POPTR_0001s05760 Populus trichocarpa POPTR_0001s05760 N 0.833
B9GTF9_POPTR Populus trichocarpa POPTR_0002s22240 N 0.000
B9GWA9_POPTR Populus trichocarpa POPTR_0003s20310 N 0.845
B9IAR9_POPTR Populus trichocarpa POPTR_0014s16340 N 0.713
ppa003564m Prunus persica ppa003564m N 0.706
ppa019338m Prunus persica ppa019338m N 0.701