B9GWA9_POPTR (Populus trichocarpa)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		POPTR_0003s20310 T00747_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0003s20310.1 CCCH ZF 234 255
POPTR_0003s20310.1 RRM 369 428
POPTR_0003s20310.2 CCCH ZF 233 255
POPTR_0003s20310.2 RRM 369 428
POPTR_0003s20310.3 CCCH ZF 234 255
POPTR_0003s20310.3 RRM 369 428

Links

Other CCCH ZF,RRM family RBPs
Other Populus trichocarpa RBPs

79 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
POPTR_0001s05760 Populus trichocarpa POPTR_0001s05760 N 0.988
cassava9561.m1 Manihot esculenta cassava9561.m1 N 0.976
cassava7293.valid.m1 Manihot esculenta cassava7293.valid.m1 N 0.976
cassava7294.valid.m1 Manihot esculenta cassava7294.valid.m1 N 0.976
cassava7292.valid.m1 Manihot esculenta cassava7292.valid.m1 N 0.976
ppa023263m Prunus persica ppa023263m N 0.939
BGIOSIBCE026070 Oryza indica BGIOSIBCE026070 N 0.927
GSVIVG00001467001 Vitis vinifera GSVIVG00001467001 N 0.927
LOC_Os07g48410 Oryza sativa LOC_Os07g48410 N 0.927
Glyma09g35980.1 Glycine max Glyma09g35980.1 N 0.927
Glyma09g35990.1 Glycine max Glyma09g35990.1 N 0.927
Glyma12g01350.1 Glycine max Glyma12g01350.1 N 0.927
Glyma12g01340.1 Glycine max Glyma12g01340.1 N 0.927
MDP0000243086 Malus x domestica MDP0000243086 N 0.927
GRMZM2G311665 Zea mays GRMZM2G311665 N 0.927
SB02G043180 Sorghum bicolor Sb02g043180 N 0.927
LOC_Os03g21160 Oryza sativa LOC_Os03g21160 N 0.915
BGIOSIBCE010970 Oryza indica BGIOSIBCE010970 N 0.915
30169.m006471 Ricinus communis 30169.m006471 N 0.904
LjT28K11.10.nd Lotus japonicus LjT28K11.10.nd N 0.904
LOC_Os03g21140 Oryza sativa LOC_Os03g21140 N 0.904
BGIOSIBCE010969 Oryza indica BGIOSIBCE010969 N 0.904
Cucsa.166080 Cucumis sativus Cucsa.166080 N 0.902
GRMZM2G003424 Zea mays GRMZM2G003424 N 0.902
SB01G036490 Sorghum bicolor Sb01g036490 N 0.902
GRMZM2G086614 Zea mays GRMZM2G086614 N 0.902
MDP0000120231 Malus x domestica MDP0000120231 N 0.892
BRADI1G17510 Brachypodium distachyon BRADI1G17510 N 0.890
cassava30651.valid.m1 Manihot esculenta cassava30651.valid.m1 N 0.881
cassava30652.valid.m1 Manihot esculenta cassava30652.valid.m1 N 0.881
B9GI27_POPTR Populus trichocarpa POPTR_0001s26250 N 0.880
GRMZM2G044004 Zea mays GRMZM2G044004 N 0.880
GSVIVG00031538001 Vitis vinifera GSVIVG00031538001 N 0.880
mgf014647m Mimulus guttatus mgf014647m N 0.880
SB08G001980 Sorghum bicolor Sb08g001980 N 0.880
MDP0000220601 Malus x domestica MDP0000220601 N 0.880
ppa002413m Prunus persica ppa002413m N 0.880
GRMZM2G368883 Zea mays GRMZM2G368883 N 0.867
MDP0000120462 Malus x domestica MDP0000120462 N 0.867
BRADI4G44040 Brachypodium distachyon BRADI4G44040 N 0.866
cassava2158.valid.m1 Manihot esculenta cassava2158.valid.m1 N 0.862
MDP0000259773 Malus x domestica MDP0000259773 N 0.855
Medtr4g118330 Medicago truncatula Medtr4g118330 N 0.855
GRMZM2G346113 Zea mays GRMZM2G346113 N 0.855
MDP0000256775 Malus x domestica MDP0000256775 N 0.855
B9HNZ4_POPTR Populus trichocarpa POPTR_0009s05520 N 0.845
SB05G001540 Sorghum bicolor Sb05g001540 N 0.843
BRADI1G63570 Brachypodium distachyon BRADI1G63570 N 0.831
mgf000973m Mimulus guttatus mgf000973m N 0.821
AT3G51950 Arabidopsis thaliana AT3G51950-TAIR-G N 0.816
XM_002877790.1 Arabidopsis lyrata fgenesh2_kg.5__1545__AT3G51950.1 N 0.816
mgf002273m Mimulus guttatus mgf002273m N 0.812
Cucsa.333940 Cucumis sativus Cucsa.333940 N 0.802
ppa002383m Prunus persica ppa002383m N 0.800
GRMZM2G132749 Zea mays GRMZM2G132749 N 0.795
30169.m006472 Ricinus communis 30169.m006472 N 0.788
MDP0000164538 Malus x domestica MDP0000164538 N 0.788
Medtr5g008940 Medicago truncatula Medtr5g008940 N 0.782
chr2.CM0018.150.nc Lotus japonicus chr2.CM0018.150.nc N 0.779
cassava2159.valid.m1 Manihot esculenta cassava2159.valid.m1 N 0.776
PK18074.1 Cannabis sativa PK18074.1 N 0.776
B9GI28_POPTR Populus trichocarpa POPTR_0001s26240 N 0.767
e_gw1.136.54.1 Physcomitrella patens e_gw1.136.54.1 N 0.762
cassava34046.m1 Manihot esculenta cassava34046.m1 N 0.759
Glyma11g01780.1 Glycine max Glyma11g01780.1 N 0.759
Glyma01g43700.1 Glycine max Glyma01g43700.1 N 0.759
XM_002313318.1 Populus trichocarpa POPTR_0009s05510 N 0.756
e_gw1.31.137.1 Physcomitrella patens e_gw1.31.137.1 N 0.735
PK20504.1 Cannabis sativa PK20504.1 N 0.729
MDP0000214614 Malus x domestica MDP0000214614 N 0.718
ppa003564m Prunus persica ppa003564m N 0.718
estExt_fgenesh2_pg.C_00420 Selaginella moellendorfii estExt_fgenesh2_pg.C_00420 N 0.711
XM_002873527.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000986 N 0.711
AT5G12440 Arabidopsis thaliana AT5G12440-TAIR-G N 0.711
27613.m000645 Ricinus communis 27613.m000645 N 0.709
29223.m000023 Ricinus communis 29223.m000023 N 0.706
estExt_fgenesh2_pg.C_80472 Selaginella moellendorfii estExt_fgenesh2_pg.C_80472 N 0.702
e_gw1.24.612.1 Selaginella moellendorfii e_gw1.24.612.1 N 0.702