CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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BRADI3G16377
(
Brachypodium distachyon
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
BRADI3G16377
T02000_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
BRADI3G16377.1
CCCH ZF
103
128
FKTKLCCKFRAGTCPYVTNCNFAHGM
BRADI3G16377.1
CCCH ZF
176
202
YKGRHCKKFYTEEGCPYGDACTFLHDE
BRADI3G16377.1
CCCH ZF
241
267
WKTRICNKWEMTGYCPFGSKCHFAHGA
Links
Other
CCCH ZF
family RBPs
Other
Brachypodium distachyon
RBPs
24 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
30054.m000804
Ricinus communis
30054.m000804
N
0.925
AT1G32360
Arabidopsis thaliana
AT1G32360-TAIR-G
N
0.900
BGIOSIBCE026569
Oryza indica
BGIOSIBCE026569
N
0.988
BRADI3G16360
Brachypodium distachyon
BRADI3G16360
N
1.000
cassava25690.m1
Manihot esculenta
cassava25690.m1
N
0.925
cassava5467.m1
Manihot esculenta
cassava5467.m1
N
0.912
chr4.LjT10E08.110.nc
Lotus japonicus
chr4.LjT10E08.110.nc
N
0.950
Cucsa.312990
Cucumis sativus
Cucsa.312990
N
0.925
estExt_fgenesh1_pg.C_430142
Physcomitrella patens
estExt_fgenesh1_pg.C_430142
N
0.713
Glyma01g10610.1
Glycine max
Glyma01g10610.1
N
0.938
GSVIVG00013136001
Vitis vinifera
GSVIVG00013136001
N
0.925
gw1.11.272.1
Selaginella moellendorfii
gw1.11.272.1
N
0.725
LOC_Os08g06330
Oryza sativa
LOC_Os08g06330
N
0.988
MDP0000209929
Malus x domestica
MDP0000209929
N
0.925
MDP0000706016
Malus x domestica
MDP0000706016
N
0.938
Medtr8g078060
Medicago truncatula
Medtr8g078060
N
0.925
mgf003951m
Mimulus guttatus
mgf003951m
N
0.900
mgf004101m
Mimulus guttatus
mgf004101m
N
0.900
mgf012162m
Mimulus guttatus
mgf012162m
N
0.900
PK04103.1
Cannabis sativa
PK04103.1
N
0.912
B9MU37_POPTR
Populus trichocarpa
POPTR_0001s02330
N
0.925
B9GZ92_POPTR
Populus trichocarpa
POPTR_0003s09240
N
0.912
ppa008182m
Prunus persica
ppa008182m
N
0.938
XM_002890939.1
Arabidopsis lyrata
scaffold_103602.1
N
0.900