CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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TRMT1
(
Echinops telfairi
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSETEG00000015483
T02591_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSETEP00000012550
CCCH ZF
602
626
KNFPCKRFKEGTCHHGDQCCYSHGS
Links
Other
CCCH ZF
family RBPs
Other
Echinops telfairi
RBPs
23 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC100400743
Callithrix jacchus
ENSCJAG00000017128
I
0.000
U2af2
Dipodomys ordii
ENSDORG00000003250
I
0.000
U2AF2
Felis catus
ENSFCAG00000011504
I
0.000
XM_001119590.1
Macaca mulatta
ENSMMUG00000019197
I
0.000
ENSPCAG00000014399
Procavia capensis
ENSPCAG00000014399
N
0.000
ENSPPYG00000010429
Pongo pygmaeus
ENSPPYG00000010429
N
0.000
U2AF2
Pan troglodytes
ENSPTRG00000011523
I
0.000